4OQ9 | pdb_00004oq9

Satellite Tobacco Mosaic Virus Refined to 1.4 A Resolution using non-crystallographic symmetry restraints

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C	d4oq9c_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
D	d4oq9d_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
E	d4oq9e_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
F	d4oq9f_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
G	d4oq9g_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
H	d4oq9h_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
I	d4oq9i_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
J	d4oq9j_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
K	d4oq9k_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
L	d4oq9l_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
M	d4oq9m_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
N	d4oq9n_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
O	d4oq9o_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
B	d4oq9b_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)
A	d4oq9a_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Satellite viruses	Satellite viruses	STNV coat protein	(Satellite tobacco mosaic virus ) [TaxId: 12881 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	e4oq9C1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
D	e4oq9D1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
E	e4oq9E1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
F	e4oq9F1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
G	e4oq9G1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
H	e4oq9H1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
I	e4oq9I1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
J	e4oq9J1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
K	e4oq9K1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
L	e4oq9L1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
M	e4oq9M1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
N	e4oq9N1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
O	e4oq9O1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
B	e4oq9B1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)
A	e4oq9A1	A: DP domain	X: DP domain	H: DP domain	T: DUF5074	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
C	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
D	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
E	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
F	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
G	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
H	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
I	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
J	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
K	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
L	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
M	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
N	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
O	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
B	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)
A	2.60.120.220	Mainly Beta	Sandwich	Jelly Rolls	Satellite virus coat domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	Coat protein	structural molecule activity	-	viral capsid virion component
AB [auth 1], BB [auth 2], CB [auth 3], DB [auth 4], EB [auth 5], AB [auth 1], BB [auth 2], CB [auth 3], DB [auth 4], EB [auth 5], FB [auth 6], GB [auth 7], HB [auth 8], TA [auth t], UA [auth u], VA [auth v], WA [auth w], XA [auth x], YA [auth y], ZA [auth z]	RNA (5'-R(PUPU)-3')	-	-	-
EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], EA [auth e], FA [auth f], GA [auth g], HA [auth h], IA [auth i], JA [auth j], KA [auth k], LA [auth l], MA [auth m], NA [auth n], OA [auth o], PA [auth p], QA [auth q], RA [auth r], SA [auth s]	RNA (5'-R(PUPUPUPUPUPUPUPUPUPU)-3')	-	-	-
AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, AA [auth a], BA [auth b], CA [auth c], DA [auth d], P, Q, R, S, T, U, V, W, X, Y, Z	RNA (5'-R(PAPAPAPAPAPAPAPAPAPA)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O	IPR037164	Satellite virus coat domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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