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 4RD5 | pdb_00004rd5

Crystal structure of R.NgoAVII restriction endonuclease B3 domain with cognate DNA

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyDNA-binding pseudobarrel domain 8056986 3000213 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyDNA-binding pseudobarrel domain 8056986 3000213 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BInternalin_Ne4rd5B1 A: alpha arraysX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v295.2)
AInternalin_Ne4rd5A1 A: alpha arraysX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Internalin_NECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF20731NgoFVII C-terminal B3-like DNA-binding domain (RE_NgoFVII_C)NgoFVII C-terminal B3-like DNA-binding domainThis family includes the NgoFVII (recognises GCSGC but cleavage site unknown) restriction endonuclease. This entry represents the RIFT related domain [1,2]. Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR048923Restriction endonuclease, type II, NgoFVII, C-terminal B3-like DNA-binding domainDomain
A, B
IPR019065Restriction endonuclease, type II, NgoFVII, N-terminal domainDomain