4TVU | pdb_00004tvu

Crystal structure of trehalose synthase from Deinococcus radiodurans reveals a closed conformation for catalysis of the intramolecular isomerization

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B Superfamily(Trans)glycosidases 8097952 3000313 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8100994 3001528 SCOP2B (2022-06-29)
GSCOP2 FamilyAmylase, catalytic domain 8097951 4003138 SCOP2 (2022-06-29)
GSCOP2 Familyalpha-Amylases, C-terminal beta-sheet domain 8100993 4002636 SCOP2 (2022-06-29)
GSCOP2 Superfamily(Trans)glycosidases 8097952 3000313 SCOP2 (2022-06-29)
GSCOP2 SuperfamilyGlycosyl hydrolase domain-like 8100994 3001528 SCOP2 (2022-06-29)
FSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8100994 3001528 SCOP2B (2022-06-29)
FSCOP2B Superfamily(Trans)glycosidases 8097952 3000313 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyGlycosyl hydrolase domain-like 8100994 3001528 SCOP2B (2022-06-29)
ESCOP2B Superfamily(Trans)glycosidases 8097952 3000313 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8100994 3001528 SCOP2B (2022-06-29)
DSCOP2B Superfamily(Trans)glycosidases 8097952 3000313 SCOP2B (2022-06-29)
CSCOP2B Superfamily(Trans)glycosidases 8097952 3000313 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8100994 3001528 SCOP2B (2022-06-29)
BSCOP2B Superfamily(Trans)glycosidases 8097952 3000313 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8100994 3001528 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGlycosyl hydrolase domain-like 8100994 3001528 SCOP2B (2022-06-29)
ASCOP2B Superfamily(Trans)glycosidases 8097952 3000313 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HC2e4tvuH1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: C2ECOD (develop294)
GC2e4tvuG1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: C2ECOD (develop294)
FC2e4tvuF1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: C2ECOD (develop294)
EC2e4tvuE1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: C2ECOD (develop294)
DC2e4tvuD1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: C2ECOD (develop294)
CC2e4tvuC1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: C2ECOD (develop294)
BC2e4tvuB1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: C2ECOD (develop294)
AC2e4tvuA1 A: alpha bundlesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: C2ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
H3.90.400.10 Alpha Beta Alpha-Beta Complex Oligo-1,6-glucosidase domain 2CATH (4.3.0)
H2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
G3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
G3.90.400.10 Alpha Beta Alpha-Beta Complex Oligo-1,6-glucosidase domain 2CATH (4.3.0)
G2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
F3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
F3.90.400.10 Alpha Beta Alpha-Beta Complex Oligo-1,6-glucosidase domain 2CATH (4.3.0)
F2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
E3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
E3.90.400.10 Alpha Beta Alpha-Beta Complex Oligo-1,6-glucosidase domain 2CATH (4.3.0)
E2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
D3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
D3.90.400.10 Alpha Beta Alpha-Beta Complex Oligo-1,6-glucosidase domain 2CATH (4.3.0)
D2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
C3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
C3.90.400.10 Alpha Beta Alpha-Beta Complex Oligo-1,6-glucosidase domain 2CATH (4.3.0)
C2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
B3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
B3.90.400.10 Alpha Beta Alpha-Beta Complex Oligo-1,6-glucosidase domain 2CATH (4.3.0)
B2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
A3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
A3.90.400.10 Alpha Beta Alpha-Beta Complex Oligo-1,6-glucosidase domain 2CATH (4.3.0)
A2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Trehalose synthase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR045857Oligo-1,6-glucosidase, domain 2Homologous Superfamily
A, B, C, D, E
IPR032091Maltogenic amylase-like, C-terminalDomain
A, B, C, D, E
IPR017853Glycoside hydrolase superfamilyHomologous Superfamily
A, B, C, D, E
IPR006047Glycosyl hydrolase family 13, catalytic domainDomain
A, B, C, D, E
IPR012810Trehalose synthase/alpha-amylase, N-terminalDomain
A, B, C, D, E
IPR013780Glycosyl hydrolase, all-betaHomologous Superfamily