4U7T
Crystal structure of DNMT3A-DNMT3L in complex with histone H3
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | DNA_methylase_1 | e4u7tA1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: DNA_methylase_1 | ECOD (1.6) |
A | ADDz_Dnmt3l | e4u7tA3 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: ADDz_Dnmt3l | ECOD (1.6) |
A | ADDz_Dnmt3b | e4u7tA2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: ADDz_Dnmt3b | ECOD (1.6) |
C | DNA_methylase_1 | e4u7tC1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: DNA_methylase_1 | ECOD (1.6) |
C | ADDz_Dnmt3l | e4u7tC3 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: ADDz_Dnmt3l | ECOD (1.6) |
C | ADDz_Dnmt3b | e4u7tC2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: FYVE/PHD zinc finger | F: ADDz_Dnmt3b | ECOD (1.6) |
B | DNA_methylase_1 | e4u7tB1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: DNA_methylase_1 | ECOD (1.6) |
D | DNA_methylase_1 | e4u7tD1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: S-adenosyl-L-methionine-dependent methyltransferases | F: DNA_methylase_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
D | 3.40.50.150 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21255 | DNMT3, ADD PHD zinc finger (DNMT3_ADD_GATA1-like) | DNMT3, ADD PHD zinc finger | DNMT3s are de novo DNA methyltransferases responsible for the establishment of DNA methylation patterns in mammalian genomes [1-4]. The ATRX-DNMT3-DNMT3L (ADD) domain contains two parts, a C2-C2-like zinc finger (Pfam:PF17980) and a PHD-like zinc fin ... | Domain | |
PF17980 | DNMT3, cysteine rich ADD domain, GATA1-like zinc finger (ADD_DNMT3) | DNMT3, cysteine rich ADD domain, GATA1-like zinc finger | This is a C4-type GATA1-like zinc finger of a cysteine-rich domain termed ADD (ATRX-DNMT3-DNMT3L, AD-DATRX) found in animal DNMT3A proteins. The ADD domains of the DNMT3 family have a decisive role in blocking DNMT activity in the areas of the genome ... | Domain | |
PF00145 | C-5 cytosine-specific DNA methylase (DNA_methylase) | C-5 cytosine-specific DNA methylase | Domain | ||