4UX9 | pdb_00004ux9

Crystal structure of JNK1 bound to a MKK7 docking motif

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Protein kinase-like (PK-like)	8040900	3000066	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Protein kinase-like (PK-like)	8040900	3000066	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Protein kinase-like (PK-like)	8040900	3000066	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Protein kinase-like (PK-like)	8040900	3000066	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e4ux9A1	A: Alpha-beta plaits	X: Protease propeptides/inhibitors	H: Protease propeptides/inhibitors	T: GIY-YIG	F:	ECOD (20:10:01)
B		e4ux9B1	A: Alpha-beta plaits	X: Protease propeptides/inhibitors	H: Protease propeptides/inhibitors	T: SBP_bac_5	F:	ECOD (20:10:01)
C		e4ux9C1	A: Alpha-beta plaits	X: Protease propeptides/inhibitors	H: Protease propeptides/inhibitors	T: SBP_bac_5	F:	ECOD (20:10:01)
D		e4ux9D1	A: Alpha-beta plaits	X: Protease propeptides/inhibitors	H: Protease propeptides/inhibitors	T: SBP_bac_5	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
A	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
B	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
B	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
C	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
C	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)
D	3.30.200.20	Alpha Beta	2-Layer Sandwich	Phosphorylase Kinase	domain 1	CATH (4.3.0)
D	1.10.510.10	Mainly Alpha	Orthogonal Bundle	Transferase(Phosphotransferase)	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00069	Protein kinase domain (Pkinase)	Protein kinase domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	MITOGEN-ACTIVATED PROTEIN KINASE 8	histone deacetylase binding protein binding binding enzyme binding enzyme regulator activity molecular function regulator activity histone deacetylase regulator activity protein phosphatase binding phosphatase binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding histone deacetylase binding protein binding binding enzyme binding enzyme regulator activity molecular function regulator activity histone deacetylase regulator activity protein phosphatase binding phosphatase binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity JUN kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity catalytic activity MAP kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein serine kinase activity protein serine/threonine kinase binding kinase binding protein kinase binding	regulation of protein binding regulation of molecular function negative regulation of protein binding regulation of binding negative regulation of binding biological regulation negative regulation of molecular function regulation of biological process catabolic process regulation of cellular process macroautophagy autophagy regulation of catabolic process regulation of autophagy regulation of protein binding regulation of molecular function negative regulation of protein binding regulation of binding negative regulation of binding biological regulation negative regulation of molecular function regulation of biological process catabolic process regulation of cellular process macroautophagy autophagy regulation of catabolic process regulation of autophagy regulation of macroautophagy cellular process metabolic process process utilizing autophagic mechanism regulation of metabolic process regulation of biosynthetic process positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process positive regulation of macromolecule metabolic process macromolecule metabolic process positive regulation of cellular process positive regulation of molecular function positive regulation of cyclase activity regulation of catalytic activity positive regulation of catalytic activity positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death protein phosphorylation phosphorylation primary metabolic process macromolecule modification peptidyl-amino acid modification phosphate-containing compound metabolic process peptidyl-threonine modification protein metabolic process protein modification process phosphorus metabolic process peptidyl-threonine phosphorylation cellular response to stimulus cellular response to stress response to stimulus response to stress cellular senescence response to oxidative stress cellular response to chemical stimulus response to chemical cellular response to oxidative stress cellular response to chemical stress signaling intracellular signal transduction cell communication intracellular signaling cassette MAPK cascade signal transduction regulation of localization regulation of protein localization regulation of protein localization to mitochondrion localization macromolecule localization protein localization to organelle positive regulation of protein localization protein localization to mitochondrion intracellular protein localization positive regulation of protein localization to mitochondrion JNK cascade response to light stimulus response to radiation response to abiotic stimulus response to UV immune response-regulating cell surface receptor signaling pathway cell surface receptor signaling pathway immune response Fc receptor signaling pathway immune response-regulating signaling pathway regulation of response to stimulus immune system process Fc-epsilon receptor signaling pathway regulation of immune response regulation of immune system process negative regulation of catabolic process negative regulation of metabolic process negative regulation of biological process negative regulation of autophagy negative regulation of cellular process peptidyl-serine modification peptidyl-serine phosphorylation response to nutrient levels cellular response to amino acid starvation cellular response to starvation cellular response to nutrient levels response to amino acid starvation response to starvation positive regulation of protein metabolic process regulation of protein metabolic process regulation of primary metabolic process JUN phosphorylation stress-activated MAPK cascade stress-activated protein kinase signaling cascade rhythmic process circadian rhythm regulation of circadian rhythm negative regulation of programmed cell death negative regulation of apoptotic process integrin-mediated signaling pathway biological process involved in interspecies interaction between organisms response to lipid response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin multicellular organismal process multicellular organismal-level homeostasis homeostatic process energy homeostasis positive regulation of cell communication positive regulation of response to biotic stimulus positive regulation of signal transduction pattern recognition receptor signaling pathway regulation of NLRP3 inflammasome complex assembly positive regulation of NLRP3 inflammasome complex assembly regulation of signal transduction cellular component biogenesis immune response-activating signaling pathway cellular component assembly inflammasome-mediated signaling pathway positive regulation of immune response canonical inflammasome complex assembly positive regulation of immune system process innate immune response-activating signaling pathway positive regulation of pattern recognition receptor signaling pathway regulation of innate immune response positive regulation of intracellular signal transduction positive regulation of inflammasome-mediated signaling pathway regulation of inflammasome-mediated signaling pathway defense response to other organism regulation of pattern recognition receptor signaling pathway NLRP3 inflammasome complex assembly positive regulation of defense response activation of innate immune response inflammatory response activation of immune response cytoplasmic pattern recognition receptor signaling pathway regulation of defense response regulation of response to biotic stimulus regulation of cellular component organization positive regulation of cellular component organization regulation of response to external stimulus intracellular receptor signaling pathway regulation of cytoplasmic pattern recognition receptor signaling pathway positive regulation of response to stimulus cellular component organization regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly positive regulation of response to external stimulus regulation of intracellular signal transduction regulation of response to stress innate immune response protein-containing complex assembly cellular component organization or biogenesis regulation of signaling positive regulation of innate immune response defense response protein-containing complex organization positive regulation of cellular component biogenesis defense response to symbiont regulation of cellular component biogenesis regulation of cell communication positive regulation of signaling response to mechanical stimulus response to reactive oxygen species cellular response to reactive oxygen species cellular response to mechanical stimulus cellular response to abiotic stimulus cellular response to external stimulus cellular response to environmental stimulus regulation of cell killing positive regulation of cell killing cell killing	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol basal dendrite somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection axon membrane-bounded organelle nucleus cellular anatomical structure intracellular anatomical structure cytoplasm cytosol basal dendrite somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection axon membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen synapse cell junction
E [auth F], F [auth G], G [auth H], H [auth I]	DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 7	MAP kinase kinase activity protein serine/threonine/tyrosine kinase activity catalytic activity, acting on a protein JUN kinase kinase activity kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein serine kinase activity protein phosphatase binding phosphatase binding protein binding MAP kinase kinase activity protein serine/threonine/tyrosine kinase activity catalytic activity, acting on a protein JUN kinase kinase activity kinase activity protein kinase activity transferase activity catalytic activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein serine kinase activity protein phosphatase binding phosphatase binding protein binding binding enzyme binding protein tyrosine kinase activity cation binding magnesium ion binding ion binding metal ion binding small molecule binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding protein serine/threonine kinase activity MAP kinase activity kinase binding protein kinase binding molecular function activator activity molecular function regulator activity	neuron apoptotic process regulation of biological process regulation of cellular process regulation of apoptotic process biological regulation regulation of programmed cell death regulation of motor neuron apoptotic process motor neuron apoptotic process cell death cellular process apoptotic process programmed cell death regulation of neuron apoptotic process cellular response to stimulus neuron apoptotic process regulation of biological process regulation of cellular process regulation of apoptotic process biological regulation regulation of programmed cell death regulation of motor neuron apoptotic process motor neuron apoptotic process cell death cellular process apoptotic process programmed cell death regulation of neuron apoptotic process cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus positive regulation of ERK1 and ERK2 cascade regulation of intracellular signal transduction intracellular signaling cassette signal transduction positive regulation of cellular process regulation of signaling positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of response to stimulus MAPK cascade regulation of cell communication ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade positive regulation of signaling stress-activated MAPK cascade stress-activated protein kinase signaling cascade cellular response to stress response to stress biological process involved in interspecies interaction between organisms response to lipid response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus cellular response to chemical stimulus response to chemical response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin cellular senescence positive regulation of JNK cascade JNK cascade regulation of JNK cascade response to light stimulus response to radiation response to abiotic stimulus response to UV response to wounding immune response-regulating cell surface receptor signaling pathway cell surface receptor signaling pathway immune response Fc receptor signaling pathway immune response-regulating signaling pathway immune system process Fc-epsilon receptor signaling pathway regulation of immune response regulation of immune system process positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process positive regulation of organelle organization regulation of telomere maintenance regulation of cellular component organization positive regulation of cellular component organization telomere organization cellular component organization cellular component organization or biogenesis positive regulation of telomere maintenance chromosome organization regulation of chromosome organization DNA metabolic process regulation of organelle organization positive regulation of chromosome organization telomere maintenance organelle organization positive regulation of DNA metabolic process regulation of DNA metabolic process response to heat response to temperature stimulus response to peptide cellular response to interleukin-1 response to cytokine cellular response to cytokine stimulus response to interleukin-1 response to osmotic stress response to tumor necrosis factor	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR003527	Mitogen-activated protein (MAP) kinase, conserved site	Conserved Site
A, B, C, D	IPR000719	Protein kinase domain	Domain
A, B, C, D	IPR050117	Mitogen-activated protein (MAP) kinase	Family
A, B, C, D	IPR008351	Mitogen-activated protein (MAP) kinase, JNK	Family
A, B, C, D	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR008271	Serine/threonine-protein kinase, active site	Active Site
E [auth F], F [auth G], G [auth H], H [auth I]	IPR052468	Dual specificity MAP kinase kinase	Family
E [auth F], F [auth G], G [auth H], H [auth I]	IPR000719	Protein kinase domain	Domain
E [auth F], F [auth G], G [auth H], H [auth I]	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
E [auth F], F [auth G], G [auth H], H [auth I]	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: P45983	acute liver failure Hyperalgesia trigeminal neuralgia extrahepatic cholestasis glioblastoma ischemia reperfusion injury ovarian cancer atopic eczema precancerous condition cancer schizophrenia gastric cancer hereditary diffuse gastric adenocarcinoma malignant ependymoma acute myeloid leukemia acute liver failure Hyperalgesia trigeminal neuralgia extrahepatic cholestasis glioblastoma ischemia reperfusion injury ovarian cancer atopic eczema precancerous condition cancer schizophrenia gastric cancer hereditary diffuse gastric adenocarcinoma malignant ependymoma acute myeloid leukemia pancreatic intraductal papillary-mucinous carcinoma atypical teratoid rhabdoid tumor depressive disorder thrombocytopenia due to immune destruction tuberculosis gastric neoplasm malignant glioma medulloblastoma osteosarcoma pilocytic astrocytoma breast cancer spina bifida dermatitis, atopic
E [auth F], F [auth G], G [auth H], H [auth I]	Pharos: O14733	congestive heart failure Mammary Neoplasms, Experimental breast carcinoma pancreatic ductal adenocarcinoma atypical teratoid rhabdoid tumor glioblastoma lung benign neoplasm osteosarcoma pancreatic intraductal papillary-mucinous carcinoma schizophrenia breast cancer colorectal adenocarcinoma Emery-Dreifuss muscular dystrophy large cell medulloblastoma ovarian cancer congestive heart failure Mammary Neoplasms, Experimental breast carcinoma pancreatic ductal adenocarcinoma atypical teratoid rhabdoid tumor glioblastoma lung benign neoplasm osteosarcoma pancreatic intraductal papillary-mucinous carcinoma schizophrenia breast cancer colorectal adenocarcinoma Emery-Dreifuss muscular dystrophy large cell medulloblastoma ovarian cancer precancerous condition heart failure malignant glioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.