Annotations: 4V5V

Structure of respiratory syncytial virus nucleocapsid protein, P1 crystal form

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth BD]	Ribosomal_L1	e4v5vBD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
Y [auth BC]	Ribosomal_L1	e4v5vBC1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
X [auth BB]	Ribosomal_L1	e4v5vBB1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
W [auth BA]	Ribosomal_L1	e4v5vBA1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
V [auth AV]	Ribosomal_L1	e4v5vAV1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
U [auth AU]	Ribosomal_L1	e4v5vAU1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
T [auth AT]	Ribosomal_L1	e4v5vAT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
S [auth AS]	Ribosomal_L1	e4v5vAS1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
RA [auth BZ]	Ribosomal_L1	e4v5vBZ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
R [auth AR]	Ribosomal_L1	e4v5vAR1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
QA [auth BY]	Ribosomal_L1	e4v5vBY1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
Q [auth AQ]	Ribosomal_L1	e4v5vAQ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
P [auth AP]	Ribosomal_L1	e4v5vAP1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
OA [auth BW]	Ribosomal_L1	e4v5vBW1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
O [auth AO]	Ribosomal_L1	e4v5vAO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
N [auth AN]	Ribosomal_L1	e4v5vAN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
MA [auth BQ]	Ribosomal_L1	e4v5vBQ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
LA [auth BP]	Ribosomal_L1	e4v5vBP1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
L [auth AL]	Ribosomal_L1	e4v5vAL1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
KA [auth BO]	Ribosomal_L1	e4v5vBO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
JA [auth BN]	Ribosomal_L1	e4v5vBN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
J [auth AJ]	Ribosomal_L1	e4v5vAJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
IA [auth BM]	Ribosomal_L1	e4v5vBM1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
I [auth AI]	Ribosomal_L1	e4v5vAI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
HA [auth BL]	Ribosomal_L1	e4v5vBL1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
H [auth AH]	Ribosomal_L1	e4v5vAH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
GA [auth BK]	Ribosomal_L1	e4v5vBK1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
G [auth AG]	Ribosomal_L1	e4v5vAG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
FA [auth BJ]	Ribosomal_L1	e4v5vBJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
F [auth AF]	Ribosomal_L1	e4v5vAF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
EA [auth BI]	Ribosomal_L1	e4v5vBI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
E [auth AE]	Ribosomal_L1	e4v5vAE1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
DA [auth BH]	Ribosomal_L1	e4v5vBH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
D [auth AD]	Ribosomal_L1	e4v5vAD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
CA [auth BG]	Ribosomal_L1	e4v5vBG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
C [auth AC]	Ribosomal_L1	e4v5vAC1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
BA [auth BF]	Ribosomal_L1	e4v5vBF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
B [auth AB]	Ribosomal_L1	e4v5vAB1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
AA [auth BE]	Ribosomal_L1	e4v5vBE1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
A [auth AA]	Ribosomal_L1	e4v5vAA1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
K [auth AK], M [auth AM], NA [auth BR], PA [auth BX]	RNA	-	-	-
A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], CA [auth BG], D [auth AD], DA [auth BH], E [auth AE], EA [auth BI], F [auth AF], FA [auth BJ], G [auth AG], GA [auth BK], H [auth AH], HA [auth BL], I [auth AI], IA [auth BM], J [auth AJ], JA [auth BN], KA [auth BO], L [auth AL], LA [auth BP], MA [auth BQ], N [auth AN], O [auth AO], OA [auth BW], P [auth AP], Q [auth AQ], QA [auth BY], R [auth AR], RA [auth BZ], S [auth AS], T [auth AT], U [auth AU], V [auth AV], W [auth BA], X [auth BB], Y [auth BC], Z [auth BD]	RESPIRATORY SYNCYTIAL VIRUS NUCLEOCAPSID PROTEIN	enzyme regulator activity protein kinase inhibitor activity molecular function inhibitor activity molecular function regulator activity enzyme inhibitor activity protein kinase regulator activity protein serine/threonine kinase inhibitor activity kinase inhibitor activity kinase regulator activity RNA binding binding nucleic acid binding	symbiont-mediated perturbation of host defense response symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host pathogen-associated molecular pattern receptor signaling pathway symbiont-mediated perturbation of host immune response biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host innate immune response symbiont-mediated perturbation of host signal transduction pathway symbiont-mediated perturbation of host defense response symbiont-mediated perturbation of host cellular process symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MAVS activity biological process involved in interspecies interaction between organisms symbiont-mediated suppression of host pathogen-associated molecular pattern receptor signaling pathway symbiont-mediated perturbation of host immune response biological process involved in interaction with host biological process involved in symbiotic interaction symbiont-mediated suppression of host signal transduction pathway symbiont-mediated suppression of host immune response symbiont-mediated suppression of host innate immune response symbiont-mediated perturbation of host process symbiont-mediated perturbation of host innate immune response symbiont-mediated perturbation of host signal transduction pathway modulation of process of another organism symbiont-mediated suppression of cytoplasmic pattern recognition receptor signaling pathway response to stimulus response to other organism symbiont-mediated perturbation of host defenses symbiont-mediated suppression of host PKR/eIFalpha signaling symbiont-mediated response to host defenses response to external stimulus response to biotic stimulus symbiont-mediated suppression of host-directed shutoff of host translation symbiont-mediated suppression of host defenses response to host response to external biotic stimulus symbiont-mediated suppression of host interferon-mediated signaling pathway symbiont-mediated suppression of host type I interferon-mediated signaling pathway symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of MDA-5 activity symbiont-mediated perturbation of host NF-kappaB cascade symbiont-mediated suppression of host NF-kappaB cascade	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], A [auth AA], AA [auth BE], B [auth AB], BA [auth BF], C [auth AC], CA [auth BG], D [auth AD], DA [auth BH], E [auth AE], EA [auth BI], F [auth AF], FA [auth BJ], G [auth AG], GA [auth BK], H [auth AH], HA [auth BL], I [auth AI], IA [auth BM], J [auth AJ], JA [auth BN], KA [auth BO], L [auth AL], LA [auth BP], MA [auth BQ], N [auth AN], O [auth AO], OA [auth BW], P [auth AP], Q [auth AQ], QA [auth BY], R [auth AR], RA [auth BZ], S [auth AS], T [auth AT], U [auth AU], V [auth AV], W [auth BA], X [auth BB], Y [auth BC], Z [auth BD]	IPR004930	Pneumovirus nucleocapsid protein	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

4V5V | pdb_00004v5v

Structure of respiratory syncytial virus nucleocapsid protein, P1 crystal form

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage