4V5W | pdb_00004v5w

Grapevine Fanleaf virus

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth CL]	Ribosomal_L1	e4v5wCL1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
Z [auth BF]	Ribosomal_L1	e4v5wBF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
YA [auth CK]	Ribosomal_L1	e4v5wCK1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
Y [auth BE]	Ribosomal_L1	e4v5wBE1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
XA [auth CJ]	Ribosomal_L1	e4v5wCJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
X [auth BD]	Ribosomal_L1	e4v5wBD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
WA [auth CI]	Ribosomal_L1	e4v5wCI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
W [auth BC]	Ribosomal_L1	e4v5wBC1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
VA [auth CH]	Ribosomal_L1	e4v5wCH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
V [auth BB]	Ribosomal_L1	e4v5wBB1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
UA [auth CG]	Ribosomal_L1	e4v5wCG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
U [auth BA]	Ribosomal_L1	e4v5wBA1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
TA [auth CF]	Ribosomal_L1	e4v5wCF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
T [auth AT]	Ribosomal_L1	e4v5wAT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
SA [auth CE]	Ribosomal_L1	e4v5wCE1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
S [auth AS]	Ribosomal_L1	e4v5wAS1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
RA [auth CD]	Ribosomal_L1	e4v5wCD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
R [auth AR]	Ribosomal_L1	e4v5wAR1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
QA [auth CC]	Ribosomal_L1	e4v5wCC1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
Q [auth AQ]	Ribosomal_L1	e4v5wAQ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
PA [auth CB]	Ribosomal_L1	e4v5wCB1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
P [auth AP]	Ribosomal_L1	e4v5wAP1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
OA [auth CA]	Ribosomal_L1	e4v5wCA1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
O [auth AO]	Ribosomal_L1	e4v5wAO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
NA [auth BT]	Ribosomal_L1	e4v5wBT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
N [auth AN]	Ribosomal_L1	e4v5wAN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
MA [auth BS]	Ribosomal_L1	e4v5wBS1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
M [auth AM]	Ribosomal_L1	e4v5wAM1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
LA [auth BR]	Ribosomal_L1	e4v5wBR1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
L [auth AL]	Ribosomal_L1	e4v5wAL1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
KA [auth BQ]	Ribosomal_L1	e4v5wBQ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
K [auth AK]	Ribosomal_L1	e4v5wAK1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
JA [auth BP]	Ribosomal_L1	e4v5wBP1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
J [auth AJ]	Ribosomal_L1	e4v5wAJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
IA [auth BO]	Ribosomal_L1	e4v5wBO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
I [auth AI]	Ribosomal_L1	e4v5wAI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
HB [auth CT]	Ribosomal_L1	e4v5wCT1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
HA [auth BN]	Ribosomal_L1	e4v5wBN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
H [auth AH]	Ribosomal_L1	e4v5wAH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
GB [auth CS]	Ribosomal_L1	e4v5wCS1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
GA [auth BM]	Ribosomal_L1	e4v5wBM1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
G [auth AG]	Ribosomal_L1	e4v5wAG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
FB [auth CR]	Ribosomal_L1	e4v5wCR1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
FA [auth BL]	Ribosomal_L1	e4v5wBL1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
F [auth AF]	Ribosomal_L1	e4v5wAF1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
EB [auth CQ]	Ribosomal_L1	e4v5wCQ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
EA [auth BK]	Ribosomal_L1	e4v5wBK1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
E [auth AE]	Ribosomal_L1	e4v5wAE1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
DB [auth CP]	Ribosomal_L1	e4v5wCP1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
DA [auth BJ]	Ribosomal_L1	e4v5wBJ1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
D [auth AD]	Ribosomal_L1	e4v5wAD1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
CB [auth CO]	Ribosomal_L1	e4v5wCO1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
CA [auth BI]	Ribosomal_L1	e4v5wBI1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
C [auth AC]	Ribosomal_L1	e4v5wAC1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
BB [auth CN]	Ribosomal_L1	e4v5wCN1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
BA [auth BH]	Ribosomal_L1	e4v5wBH1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
B [auth AB]	Ribosomal_L1	e4v5wAB1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
AB [auth CM]	Ribosomal_L1	e4v5wCM1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
AA [auth BG]	Ribosomal_L1	e4v5wBG1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)
A [auth AA]	Ribosomal_L1	e4v5wAA1	A: alpha arrays	X: VP4 membrane interaction domain	H: VP4 membrane interaction domain	T: VP4 membrane interaction domain	F: Ribosomal_L1	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], BB [auth CN], C [auth AC], CA [auth BI], CB [auth CO], D [auth AD], DA [auth BJ], DB [auth CP], E [auth AE], EA [auth BK], EB [auth CQ], F [auth AF], FA [auth BL], FB [auth CR], G [auth AG], GA [auth BM], GB [auth CS], H [auth AH], HA [auth BN], HB [auth CT], I [auth AI], IA [auth BO], J [auth AJ], JA [auth BP], K [auth AK], KA [auth BQ], L [auth AL], LA [auth BR], M [auth AM], MA [auth BS], N [auth AN], NA [auth BT], O [auth AO], OA [auth CA], P [auth AP], PA [auth CB], Q [auth AQ], QA [auth CC], R [auth AR], RA [auth CD], S [auth AS], SA [auth CE], T [auth AT], TA [auth CF], U [auth BA], UA [auth CG], V [auth BB], VA [auth CH], W [auth BC], WA [auth CI], X [auth BD], XA [auth CJ], Y [auth BE], YA [auth CK], Z [auth BF], ZA [auth CL]	COAT PROTEIN	structural molecule activity	transport of virus in host, cell to cell transport of virus in multicellular host biological process involved in interspecies interaction between organisms migration in host viral process transport of virus biological process involved in interaction with host biological process involved in symbiotic interaction	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm host cell plasmodesma host cell plasma membrane viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm host cell plasmodesma host cell plasma membrane host cell junction host cell membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], BB [auth CN], C [auth AC], CA [auth BI], CB [auth CO], D [auth AD], DA [auth BJ], DB [auth CP], E [auth AE], EA [auth BK], EB [auth CQ], F [auth AF], FA [auth BL], FB [auth CR], G [auth AG], GA [auth BM], GB [auth CS], H [auth AH], HA [auth BN], HB [auth CT], I [auth AI], IA [auth BO], J [auth AJ], JA [auth BP], K [auth AK], KA [auth BQ], L [auth AL], LA [auth BR], M [auth AM], MA [auth BS], N [auth AN], NA [auth BT], O [auth AO], OA [auth CA], P [auth AP], PA [auth CB], Q [auth AQ], QA [auth CC], R [auth AR], RA [auth CD], S [auth AS], SA [auth CE], T [auth AT], TA [auth CF], U [auth BA], UA [auth CG], V [auth BB], VA [auth CH], W [auth BC], WA [auth CI], X [auth BD], XA [auth CJ], Y [auth BE], YA [auth CK], Z [auth BF], ZA [auth CL]	IPR021081	Nepovirus subgroup A, RNA2 polyprotein, Protein 2A	Domain
A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], BB [auth CN], C [auth AC], CA [auth BI], CB [auth CO], D [auth AD], DA [auth BJ], DB [auth CP], E [auth AE], EA [auth BK], EB [auth CQ], F [auth AF], FA [auth BL], FB [auth CR], G [auth AG], GA [auth BM], GB [auth CS], H [auth AH], HA [auth BN], HB [auth CT], I [auth AI], IA [auth BO], J [auth AJ], JA [auth BP], K [auth AK], KA [auth BQ], L [auth AL], LA [auth BR], M [auth AM], MA [auth BS], N [auth AN], NA [auth BT], O [auth AO], OA [auth CA], P [auth AP], PA [auth CB], Q [auth AQ], QA [auth CC], R [auth AR], RA [auth CD], S [auth AS], SA [auth CE], T [auth AT], TA [auth CF], U [auth BA], UA [auth CG], V [auth BB], VA [auth CH], W [auth BC], WA [auth CI], X [auth BD], XA [auth CJ], Y [auth BE], YA [auth CK], Z [auth BF], ZA [auth CL]	IPR029053	Viral coat protein subunit	Homologous Superfamily
A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], BB [auth CN], C [auth AC], CA [auth BI], CB [auth CO], D [auth AD], DA [auth BJ], DB [auth CP], E [auth AE], EA [auth BK], EB [auth CQ], F [auth AF], FA [auth BL], FB [auth CR], G [auth AG], GA [auth BM], GB [auth CS], H [auth AH], HA [auth BN], HB [auth CT], I [auth AI], IA [auth BO], J [auth AJ], JA [auth BP], K [auth AK], KA [auth BQ], L [auth AL], LA [auth BR], M [auth AM], MA [auth BS], N [auth AN], NA [auth BT], O [auth AO], OA [auth CA], P [auth AP], PA [auth CB], Q [auth AQ], QA [auth CC], R [auth AR], RA [auth CD], S [auth AS], SA [auth CE], T [auth AT], TA [auth CF], U [auth BA], UA [auth CG], V [auth BB], VA [auth CH], W [auth BC], WA [auth CI], X [auth BD], XA [auth CJ], Y [auth BE], YA [auth CK], Z [auth BF], ZA [auth CL]	IPR005306	Nepovirus coat protein, N-terminal	Domain
A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], BB [auth CN], C [auth AC], CA [auth BI], CB [auth CO], D [auth AD], DA [auth BJ], DB [auth CP], E [auth AE], EA [auth BK], EB [auth CQ], F [auth AF], FA [auth BL], FB [auth CR], G [auth AG], GA [auth BM], GB [auth CS], H [auth AH], HA [auth BN], HB [auth CT], I [auth AI], IA [auth BO], J [auth AJ], JA [auth BP], K [auth AK], KA [auth BQ], L [auth AL], LA [auth BR], M [auth AM], MA [auth BS], N [auth AN], NA [auth BT], O [auth AO], OA [auth CA], P [auth AP], PA [auth CB], Q [auth AQ], QA [auth CC], R [auth AR], RA [auth CD], S [auth AS], SA [auth CE], T [auth AT], TA [auth CF], U [auth BA], UA [auth CG], V [auth BB], VA [auth CH], W [auth BC], WA [auth CI], X [auth BD], XA [auth CJ], Y [auth BE], YA [auth CK], Z [auth BF], ZA [auth CL]	IPR005305	Nepovirus coat protein, C-terminal	Domain
A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], A [auth AA], AA [auth BG], AB [auth CM], B [auth AB], BA [auth BH], BB [auth CN], C [auth AC], CA [auth BI], CB [auth CO], D [auth AD], DA [auth BJ], DB [auth CP], E [auth AE], EA [auth BK], EB [auth CQ], F [auth AF], FA [auth BL], FB [auth CR], G [auth AG], GA [auth BM], GB [auth CS], H [auth AH], HA [auth BN], HB [auth CT], I [auth AI], IA [auth BO], J [auth AJ], JA [auth BP], K [auth AK], KA [auth BQ], L [auth AL], LA [auth BR], M [auth AM], MA [auth BS], N [auth AN], NA [auth BT], O [auth AO], OA [auth CA], P [auth AP], PA [auth CB], Q [auth AQ], QA [auth CC], R [auth AR], RA [auth CD], S [auth AS], SA [auth CE], T [auth AT], TA [auth CF], U [auth BA], UA [auth CG], V [auth BB], VA [auth CH], W [auth BC], WA [auth CI], X [auth BD], XA [auth CJ], Y [auth BE], YA [auth CK], Z [auth BF], ZA [auth CL]	IPR005054	Nepovirus coat protein	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.