Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth AH] | SCOP2B Superfamily | Ribosomal protein S8 | 8096922 | 3000709 | SCOP2B (2022-06-29) |
| H [auth AF] | SCOP2B Superfamily | Ribosomal protein S7 | 8065993 | 3000799 | SCOP2B (2022-06-29) |
| BC [auth BI] | SCOP2 Family | Ribosomal protein L10e | 8079406 | 4001135 | SCOP2 (2022-06-29) |
| BC [auth BI] | SCOP2 Superfamily | Ribosomal protein L16p/L10e | 8079407 | 3000884 | SCOP2 (2022-06-29) |
| YB [auth BQ] | SCOP2B Superfamily | Translational machinery components | 8052875 | 3000571 | SCOP2B (2022-06-29) |
| NB [auth Bo] | SCOP2B Superfamily | Ribosomal protein L39e | 8078549 | 3001756 | SCOP2B (2022-06-29) |
| MB [auth Bn] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8053562 | 3002206 | SCOP2B (2022-06-29) |
| LB [auth Bl] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8080044 | 3001320 | SCOP2B (2022-06-29) |
| KB [auth Bm] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8103126 | 3001320 | SCOP2B (2022-06-29) |
| JB [auth Bk] | SCOP2B Superfamily | Ribosomal protein L36e | 8053115 | 3002161 | SCOP2B (2022-06-29) |
| IB [auth Bj] | SCOP2B Superfamily | Translational proteins | 8087451 | 3000811 | SCOP2B (2022-06-29) |
| HB [auth Bi] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8053547 | 3002203 | SCOP2B (2022-06-29) |
| EB [auth Be] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8052917 | 3001378 | SCOP2B (2022-06-29) |
| EB [auth Be] | SCOP2B Superfamily | Ribosomal L30p/L7e protein, N-terminal domain-lke | 8052916 | 3002152 | SCOP2B (2022-06-29) |
| DB [auth Bf] | SCOP2B Superfamily | L30e-like | 8039862 | 3001739 | SCOP2B (2022-06-29) |
| AB [auth Ba] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053046 | 3000334 | SCOP2B (2022-06-29) |
| ZA [auth BY] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076760 | 3000334 | SCOP2B (2022-06-29) |
| XA [auth BX] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095962 | 3000210 | SCOP2B (2022-06-29) |
| WA [auth BV] | SCOP2B Superfamily | Ribosomal protein L22 | 8076708 | 3001078 | SCOP2B (2022-06-29) |
| VA [auth BW] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8053058 | 3002158 | SCOP2B (2022-06-29) |
| TA [auth BT] | SCOP2B Superfamily | Ribosomal protein L19 (L19e) | 8077485 | 3000890 | SCOP2B (2022-06-29) |
| RA [auth BO] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8077127 | 3001045 | SCOP2B (2022-06-29) |
| QA [auth BP] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082481 | 3000210 | SCOP2B (2022-06-29) |
| PA [auth BM] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103364 | 3000433 | SCOP2B (2022-06-29) |
| NA [auth BK] | SCOP2B Superfamily | Ribosomal protein L13 | 8066053 | 3001134 | SCOP2B (2022-06-29) |
| D [auth AD] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052760 | 3000334 | SCOP2B (2022-06-29) |
| D [auth AD] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052758 | 3001473 | SCOP2B (2022-06-29) |
| D [auth AD] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052759 | 3000135 | SCOP2B (2022-06-29) |
| KA [auth BH] | SCOP2B Superfamily | L30e-like | 8063962 | 3001739 | SCOP2B (2022-06-29) |
| IA [auth BG] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053109 | 3000334 | SCOP2B (2022-06-29) |
| HA [auth BE] | SCOP2 Family | Ribosomal protein L5 | 8073883 | 4001498 | SCOP2 (2022-06-29) |
| HA [auth BE] | SCOP2 Superfamily | RL5-like | 8073884 | 3001709 | SCOP2 (2022-06-29) |
| GA [auth BD] | SCOP2B Superfamily | Ribosomal protein L4 | 8052816 | 3001146 | SCOP2B (2022-06-29) |
| FA [auth BC] | SCOP2B Superfamily | Translational proteins | 8078363 | 3000811 | SCOP2B (2022-06-29) |
| DA [auth BA] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8098448 | 3001911 | SCOP2B (2022-06-29) |
| Z [auth AZ] | SCOP2 Family | Ribosomal protein S30e-like | 8105783 | 4005067 | SCOP2 (2022-06-29) |
| Z [auth AZ] | SCOP2 Superfamily | Ribosomal protein S30e-like | 8105784 | 3002190 | SCOP2 (2022-06-29) |
| Z [auth AZ] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053451 | 3002190 | SCOP2B (2022-06-29) |
| Y [auth AY] | SCOP2 Family | Cold shock DNA-binding domain-like | 8063429 | 4001909 | SCOP2 (2022-06-29) |
| Y [auth AY] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8063430 | 3000135 | SCOP2 (2022-06-29) |
| V [auth AV] | SCOP2 Family | Ribosomal protein S25-like | 8051322 | 4007308 | SCOP2 (2022-06-29) |
| V [auth AV] | SCOP2 Superfamily | Winged helix DNA-binding domain | 8059235 | 3000034 | SCOP2 (2022-06-29) |
| U [auth AT] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053136 | 3000068 | SCOP2B (2022-06-29) |
| B [auth AA] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8061280 | 3001397 | SCOP2B (2022-06-29) |
| S [auth AR] | SCOP2B Superfamily | Ribosomal protein S19 | 8086076 | 3000686 | SCOP2B (2022-06-29) |
| P [auth AO] | SCOP2B Superfamily | Homeodomain-like | 8052973 | 3000001 | SCOP2B (2022-06-29) |
| P [auth AO] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052974 | 3001284 | SCOP2B (2022-06-29) |
| O [auth AN] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052569 | 3000068 | SCOP2B (2022-06-29) |
| N [auth AM] | SCOP2 Family | Ribosomal protein S13 | 8102872 | 4000260 | SCOP2 (2022-06-29) |
| N [auth AM] | SCOP2 Superfamily | S13-like H2TH domain | 8102873 | 3000053 | SCOP2 (2022-06-29) |
| N [auth AM] | SCOP2B Superfamily | S13-like H2TH domain | 8098450 | 3000053 | SCOP2B (2022-06-29) |
| L [auth AK] | SCOP2B Superfamily | Translational machinery components | 8095805 | 3000571 | SCOP2B (2022-06-29) |
| K [auth AJ] | SCOP2 Family | Ribosomal protein S10 | 8098647 | 4001240 | SCOP2 (2022-06-29) |
| K [auth AJ] | SCOP2 Superfamily | Ribosomal protein S10 | 8098648 | 3001336 | SCOP2 (2022-06-29) |
| J [auth AI] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8103366 | 3000100 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth AH] | Rota_VP4_MID | e4v6iAH1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| H [auth AF] | Rota_VP4_MID | e4v6iAF1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| BC [auth BI] | Rota_VP4_MID | e4v6iBI1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| AC [auth BS] | Rota_VP4_MID | e4v6iBS1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| YB [auth BQ] | Rota_VP4_MID | e4v6iBQ1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| XB [auth Bw] | AAA_16 | e4v6iBw1 | A: alpha arrays | X: Trefoil/Plexin domain-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_16 | ECOD (v295) |
| WB [auth Bv] | AAA_16 | e4v6iBv1 | A: alpha arrays | X: Trefoil/Plexin domain-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_16 | ECOD (v295) |
| VB [auth Bu] | Acyl-CoA_dh_1 | e4v6iBu1 | A: alpha arrays | X: omega toxin-like | H: HTH | T: Three-helical HTH | F: Acyl-CoA_dh_1 | ECOD (v295) |
| UB [auth Bt] | EPSP_synthase | e4v6iBt1 | A: alpha arrays | X: P-loop domains-like | H: ARM repeat | T: ARM repeat | F: EPSP_synthase | ECOD (v295) |
| QB [auth Br] | Rota_VP4_MID | e4v6iBr1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| PB [auth Bq] | Rota_VP4_MID | e4v6iBq1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| OB [auth Bp] | Rota_VP4_MID | e4v6iBp1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| NB [auth Bo] | Rota_VP4_MID | e4v6iBo1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| MB [auth Bn] | V_ATPase_I | e4v6iBn1 | A: alpha arrays | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: V_ATPase_I | ECOD (v295) |
| LB [auth Bl] | Rota_VP4_MID | e4v6iBl1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| KB [auth Bm] | Rota_VP4_MID | e4v6iBm1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| JB [auth Bk] | KAsynt_C_assoc | e4v6iBk1 | A: alpha arrays | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (v295) |
| IB [auth Bj] | Rota_VP4_MID | e4v6iBj1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| HB [auth Bi] | V_ATPase_I | e4v6iBi1 | A: alpha arrays | X: Alpha-beta plaits | H: Pseudouridine synthase | T: Pseudouridine synthase | F: V_ATPase_I | ECOD (v295) |
| F [auth AE] | Ribos_L4_asso_C | e4v6iAE1 | A: alpha arrays | X: C-terminal helical region in 60S ribosomal protein L4 (L4p) | H: C-terminal helical region in 60S ribosomal protein L4 (L4p) | T: C-terminal helical region in 60S ribosomal protein L4 (L4p) | F: Ribos_L4_asso_C | ECOD (v295) |
| GB [auth Bh] | Rota_VP4_MID | e4v6iBh1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| FB [auth Bg] | Rota_VP4_MID | e4v6iBg1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| EB [auth Be] | Rota_VP4_MID | e4v6iBe1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| DB [auth Bf] | Rota_VP4_MID | e4v6iBf1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| CB [auth Bc] | Rota_VP4_MID | e4v6iBc1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| BB [auth Bd] | Med6 | e4v6iBd1 | A: alpha arrays | X: HTH | H: HTH | T: Three-helical HTH | F: Med6 | ECOD (v295) |
| AB [auth Ba] | Rota_VP4_MID | e4v6iBa1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| ZA [auth BY] | Rota_VP4_MID | e4v6iBY1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| YA [auth BZ] | Rota_VP4_MID | e4v6iBZ1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| XA [auth BX] | Rota_VP4_MID | e4v6iBX1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| E [auth AC] | KAsynt_C_assoc | e4v6iAC1 | A: alpha arrays | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (v295) |
| WA [auth BV] | Rota_VP4_MID | e4v6iBV1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| VA [auth BW] | KAsynt_C_assoc | e4v6iBW1 | A: alpha arrays | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (v295) |
| UA [auth BU] | Rota_VP4_MID | e4v6iBU1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| TA [auth BT] | Rota_VP4_MID | e4v6iBT1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| SA [auth BR] | Rota_VP4_MID | e4v6iBR1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| RA [auth BO] | CE2_N | e4v6iBO1 | A: alpha arrays | X: Periplasmic binding protein-like II | H: Rubredoxin-related | T: Tetrapyrrole methylase C-terminal domain | F: CE2_N | ECOD (v295) |
| QA [auth BP] | Rota_VP4_MID | e4v6iBP1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| PA [auth BM] | Rota_VP4_MID | e4v6iBM1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| OA [auth BN] | Rota_VP4_MID | e4v6iBN1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| NA [auth BK] | Rota_VP4_MID | e4v6iBK1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| D [auth AD] | Rota_VP4_MID | e4v6iAD1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| MA [auth BJ] | Rota_VP4_MID | e4v6iBJ1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| LA [auth Bs] | Ribos_L4_asso_C | e4v6iBs1 | A: alpha arrays | X: C-terminal helical region in 60S ribosomal protein L4 (L4p) | H: C-terminal helical region in 60S ribosomal protein L4 (L4p) | T: C-terminal helical region in 60S ribosomal protein L4 (L4p) | F: Ribos_L4_asso_C | ECOD (v295) |
| KA [auth BH] | Rota_VP4_MID | e4v6iBH1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| JA [auth BF] | Rota_VP4_MID | e4v6iBF1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| IA [auth BG] | FlaF_Ig-like | e4v6iBG1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v295) |
| HA [auth BE] | Rota_VP4_MID | e4v6iBE1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| GA [auth BD] | Rota_VP4_MID | e4v6iBD2 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| GA [auth BD] | e4v6iBD3 | A: alpha arrays | X: SMI1/KNR4-like | H: SMI1/KNR4-like | T: SMI1/KNR4-like | F: | ECOD (v295) | |
| FA [auth BC] | Rota_VP4_MID | e4v6iBC1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| EA [auth BB] | AAA_16 | e4v6iBB1 | A: alpha arrays | X: Trefoil/Plexin domain-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: AAA_16 | ECOD (v295) |
| DA [auth BA] | Rota_VP4_MID | e4v6iBA1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| C [auth AB] | Rota_VP4_MID | e4v6iAB1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| CA [auth AU] | Rota_VP4_MID | e4v6iAU1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| Z [auth AZ] | KAsynt_C_assoc | e4v6iAZ1 | A: alpha arrays | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (v295) |
| Y [auth AY] | Rota_VP4_MID | e4v6iAY1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| X [auth AX] | Rota_VP4_MID | e4v6iAX1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| V [auth AV] | Rota_VP4_MID | e4v6iAV1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| U [auth AT] | FecCD | e4v6iAT1 | A: alpha arrays | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: FecCD | ECOD (v295) |
| T [auth AS] | Rota_VP4_MID | e4v6iAS1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| B [auth AA] | e4v6iAA1 | A: alpha arrays | X: Cytidine deaminase-like | H: Cytidine deaminase-like | T: Cytidine deaminase-like | F: | ECOD (v295) | |
| S [auth AR] | Ribosomal_S17,Ribosomal_S17_N | e4v6iAR1 | A: alpha arrays | X: OB-fold | H: Nucleic acid-binding protein | T: Nucleic acid-binding protein | F: Ribosomal_S17,Ribosomal_S17_N | ECOD (v295) |
| R [auth AP] | Ribosomal_S17,Ribosomal_S17_N | e4v6iAP1 | A: alpha arrays | X: OB-fold | H: Nucleic acid-binding protein | T: Nucleic acid-binding protein | F: Ribosomal_S17,Ribosomal_S17_N | ECOD (v295) |
| Q [auth AQ] | KAsynt_C_assoc | e4v6iAQ1 | A: alpha arrays | X: Type II ABC importer transmembrane domain fold | H: Type II ABC importer transmembrane domain fold | T: Type II ABC importer transmembrane domain fold | F: KAsynt_C_assoc | ECOD (v295) |
| P [auth AO] | Rota_VP4_MID | e4v6iAO1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| O [auth AN] | Rota_VP4_MID | e4v6iAN1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| N [auth AM] | Cellulase | e4v6iAM1 | A: alpha arrays | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v295) |
| M [auth AL] | Rota_VP4_MID | e4v6iAL1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| L [auth AK] | Rota_VP4_MID | e4v6iAK1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| K [auth AJ] | Rota_VP4_MID | e4v6iAJ1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| J [auth AI] | Cellulase | e4v6iAI1 | A: alpha arrays | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v295) |
| A [auth Aa] | Rota_VP4_MID | e4v6iAa1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth AH] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| H [auth AF] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
| BC [auth BI] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| BC [auth BI] | PF01199 | Ribosomal protein L34e (Ribosomal_L34e) | Ribosomal protein L34e | - | Family |
| AC [auth BS] | PF17777 | Insertion domain in 60S ribosomal protein L10P (RL10P_insert) | Insertion domain in 60S ribosomal protein L10P | This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. | Domain |
| AC [auth BS] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
| AC [auth BS] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
| YB [auth BQ] | PF05162 | Ribosomal protein L41 (Ribosomal_L41) | Ribosomal protein L41 | - | Family |
| YB [auth BQ] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
| YB [auth BQ] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
| F [auth AE] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| F [auth AE] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| ZA [auth BY] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
| ZA [auth BY] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| YA [auth BZ] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | Domain | |
| XA [auth BX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| E [auth AC] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| E [auth AC] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| WA [auth BV] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| WA [auth BV] | PF00428 | 60s Acidic ribosomal protein (Ribosomal_60s) | 60s Acidic ribosomal protein | - | Family |
| VA [auth BW] | PF00428 | 60s Acidic ribosomal protein (Ribosomal_60s) | 60s Acidic ribosomal protein | - | Family |
| VA [auth BW] | PF01776 | Ribosomal L22e protein family (Ribosomal_L22e) | Ribosomal L22e protein family | - | Family |
| UA [auth BU] | PF00428 | 60s Acidic ribosomal protein (Ribosomal_60s) | 60s Acidic ribosomal protein | - | Family |
| UA [auth BU] | PF01157 | Ribosomal protein L21e (Ribosomal_L21e) | Ribosomal protein L21e | - | Family |
| TA [auth BT] | PF01280 | Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e) | Ribosomal protein L19e, N-terminal domain | This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| TA [auth BT] | PF00428 | 60s Acidic ribosomal protein (Ribosomal_60s) | 60s Acidic ribosomal protein | - | Family |
| TA [auth BT] | PF25476 | Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C) | Ribosomal protein L19e, C-terminal domain | This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. | Domain |
| SA [auth BR] | PF00935 | Ribosomal protein L44 (Ribosomal_L44) | Ribosomal protein L44 | - | Family |
| RA [auth BO] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
| RA [auth BO] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| QA [auth BP] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
| PA [auth BM] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | Domain | |
| PA [auth BM] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
| OA [auth BN] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
| OA [auth BN] | PF01781 | Ribosomal L38e protein family (Ribosomal_L38e) | Ribosomal L38e protein family | Domain | |
| OA [auth BN] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| NA [auth BK] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| D [auth AD] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| D [auth AD] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
| D [auth AD] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| MA [auth BJ] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| MA [auth BJ] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| MA [auth BJ] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | This entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. | Domain |
| KA [auth BH] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| KA [auth BH] | PF01655 | Ribosomal protein L32 (Ribosomal_L32e) | Ribosomal protein L32 | - | Family |
| JA [auth BF] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| JA [auth BF] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
| IA [auth BG] | PF01198 | Ribosomal protein L31e (Ribosomal_L31e) | Ribosomal protein L31e | - | Family |
| IA [auth BG] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
| HA [auth BE] | PF08079 | Ribosomal L30 N-terminal domain (Ribosomal_L30_N) | Ribosomal L30 N-terminal domain | This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1]. | Domain |
| HA [auth BE] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| HA [auth BE] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| HA [auth BE] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
| GA [auth BD] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| FA [auth BC] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| EA [auth BB] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| EA [auth BB] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| DA [auth BA] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | The N-terminal region of the eukaryotic ribosomal L27 has the KOW motif. C-terminal region is represented by this family. | Domain |
| DA [auth BA] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
| C [auth AB] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| C [auth AB] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| CA [auth AU] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| Z [auth AZ] | PF04758 | Ribosomal protein S30 (Ribosomal_S30) | Ribosomal protein S30 | - | Family |
| Y [auth AY] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | Domain | |
| U [auth AT] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
| T [auth AS] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| B [auth AA] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| B [auth AA] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
| R [auth AP] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| Q [auth AQ] | PF00833 | Ribosomal S17 (Ribosomal_S17e) | Ribosomal S17 | - | Family |
| P [auth AO] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| N [auth AM] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| M [auth AL] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| K [auth AJ] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |














