Ribosome-SecY complex.
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth AE] | SCOP2B Superfamily | Ribosomal protein L4 | 8096356 | 3001146 | SCOP2B (2022-06-29) |
| H [auth AD] | SCOP2B Superfamily | Translational proteins | 8032955 | 3000811 | SCOP2B (2022-06-29) |
| G [auth A6] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8035394 | 3000135 | SCOP2B (2022-06-29) |
| G [auth A6] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8035393 | 3000334 | SCOP2B (2022-06-29) |
| F [auth A5] | SCOP2B Superfamily | Ribosomal protein L1p/L10e-like | 8065348 | 3001911 | SCOP2B (2022-06-29) |
| DB [auth BU] | SCOP2B Superfamily | Ribosomal protein S21 | 8053090 | 3002159 | SCOP2B (2022-06-29) |
| BB [auth BS] | SCOP2B Superfamily | Ribosomal protein S19 | 8103915 | 3000686 | SCOP2B (2022-06-29) |
| ZA [auth BQ] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059276 | 3000135 | SCOP2B (2022-06-29) |
| YA [auth BP] | SCOP2B Superfamily | Ribosomal protein S16 | 8106547 | 3000680 | SCOP2B (2022-06-29) |
| XA [auth BO] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8100290 | 3001284 | SCOP2B (2022-06-29) |
| E [auth AC] | SCOP2B Superfamily | Sec-beta subunit | 8040632 | 3000289 | SCOP2B (2022-06-29) |
| WA [auth BN] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052568 | 3000068 | SCOP2B (2022-06-29) |
| VA [auth BM] | SCOP2B Superfamily | S13-like H2TH domain | 8098358 | 3000053 | SCOP2B (2022-06-29) |
| UA [auth BL] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8106545 | 3000135 | SCOP2B (2022-06-29) |
| TA [auth BK] | SCOP2B Superfamily | Translational machinery components | 8035368 | 3000571 | SCOP2B (2022-06-29) |
| SA [auth BJ] | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2022-06-29) |
| RA [auth BI] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082661 | 3000100 | SCOP2B (2022-06-29) |
| QA [auth BH] | SCOP2B Superfamily | Ribosomal protein S8 | 8079059 | 3000709 | SCOP2B (2022-06-29) |
| PA [auth BG] | SCOP2B Superfamily | Ribosomal protein S7 | 8077979 | 3000799 | SCOP2B (2022-06-29) |
| OA [auth BF] | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2022-06-29) |
| MA [auth BD] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2022-06-29) |
| KA [auth BB] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063838 | 3001397 | SCOP2B (2022-06-29) |
| IA [auth A4] | SCOP2B Superfamily | Ribosomal protein L36 | 8035391 | 3001346 | SCOP2B (2022-06-29) |
| HA [auth A3] | SCOP2B Superfamily | L35p-like | 8035388 | 3000790 | SCOP2B (2022-06-29) |
| FA [auth A1] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096362 | 3001320 | SCOP2B (2022-06-29) |
| EA [auth A0] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8096380 | 3001320 | SCOP2B (2022-06-29) |
| DA [auth AZ] | SCOP2B Superfamily | Ribosomal protein L30p/L7e | 8096372 | 3001378 | SCOP2B (2022-06-29) |
| CA [auth AY] | SCOP2B Superfamily | Ribosomal protein L29 (L29p) | 8096370 | 3000713 | SCOP2B (2022-06-29) |
| BA [auth AX] | SCOP2B Superfamily | L28p-like | 8035424 | 3001966 | SCOP2B (2022-06-29) |
| AA [auth AW] | SCOP2B Superfamily | Ribosomal L27 protein-like | 8096338 | 3000539 | SCOP2B (2022-06-29) |
| Z [auth AV] | SCOP2B Superfamily | Ribosomal protein L25-like | 8042538 | 3001161 | SCOP2B (2022-06-29) |
| Y [auth AU] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096358 | 3000334 | SCOP2B (2022-06-29) |
| X [auth AT] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8035415 | 3000210 | SCOP2B (2022-06-29) |
| W [auth AS] | SCOP2B Superfamily | Ribosomal protein L22 | 8096336 | 3001078 | SCOP2B (2022-06-29) |
| V [auth AR] | SCOP2B Superfamily | l21p-like | 8096354 | 3002005 | SCOP2B (2022-06-29) |
| U [auth AQ] | SCOP2B Superfamily | Ribosomal protein L20 | 8096382 | 3000563 | SCOP2B (2022-06-29) |
| T [auth AP] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8096364 | 3000334 | SCOP2B (2022-06-29) |
| S [auth AO] | SCOP2B Superfamily | Translational machinery components | 8032969 | 3000571 | SCOP2B (2022-06-29) |
| R [auth AN] | SCOP2B Superfamily | Prokaryotic ribosomal protein L17 | 8035409 | 3000995 | SCOP2B (2022-06-29) |
| Q [auth AM] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8096366 | 3000884 | SCOP2B (2022-06-29) |
| P [auth AL] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8070553 | 3001045 | SCOP2B (2022-06-29) |
| O [auth AK] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8103358 | 3000433 | SCOP2B (2022-06-29) |
| N [auth AJ] | SCOP2B Superfamily | Ribosomal protein L13 | 8096350 | 3001134 | SCOP2B (2022-06-29) |
| M [auth AI] | SCOP2B Superfamily | Ribosomal L11/L12e N-terminal domain-like | 8032963 | 3000950 | SCOP2B (2022-06-29) |
| M [auth AI] | SCOP2B Superfamily | Ribosomal protein L11, C-terminal domain | 8032961 | 3001186 | SCOP2B (2022-06-29) |
| L [auth AH] | SCOP2B Superfamily | Ribosomal protein L9 C-domain | 8032958 | 3000329 | SCOP2B (2022-06-29) |
| L [auth AH] | SCOP2B Superfamily | L9 N-domain-like | 8032960 | 3000338 | SCOP2B (2022-06-29) |
| K [auth AG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035397 | 3000724 | SCOP2B (2022-06-29) |
| K [auth AG] | SCOP2B Superfamily | Ribosomal protein L6 | 8035398 | 3000724 | SCOP2B (2022-06-29) |
| J [auth AF] | SCOP2B Superfamily | RL5-like | 8096352 | 3001709 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth AE] | Rota_VP4_MID | e4v7iAE1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| H [auth AD] | PemK_toxin | e4v7iAD1 | A: alpha arrays | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v295) |
| G [auth A6] | Rota_VP4_MID | e4v7iA61 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| F [auth A5] | Rota_VP4_MID | e4v7iA51 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| DB [auth BU] | Rota_VP4_MID | e4v7iBU1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| CB [auth BT] | Rota_VP4_MID | e4v7iBT1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| BB [auth BS] | Cellulase | e4v7iBS1 | A: alpha arrays | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v295) |
| AB [auth BR] | Rota_VP4_MID | e4v7iBR1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| ZA [auth BQ] | Cellulase | e4v7iBQ1 | A: alpha arrays | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v295) |
| YA [auth BP] | Rota_VP4_MID | e4v7iBP1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| XA [auth BO] | Rota_VP4_MID | e4v7iBO1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| E [auth AC] | Rota_VP4_MID | e4v7iAC1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| WA [auth BN] | Rota_VP4_MID | e4v7iBN1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| VA [auth BM] | Cellulase | e4v7iBM1 | A: alpha arrays | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v295) |
| UA [auth BL] | Rota_VP4_MID | e4v7iBL1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| TA [auth BK] | Rota_VP4_MID | e4v7iBK1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| SA [auth BJ] | Rota_VP4_MID | e4v7iBJ1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| RA [auth BI] | Cellulase | e4v7iBI1 | A: alpha arrays | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v295) |
| QA [auth BH] | Rota_VP4_MID | e4v7iBH1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| PA [auth BG] | Rota_VP4_MID | e4v7iBG1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| OA [auth BF] | Rota_VP4_MID | e4v7iBF1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| NA [auth BE] | Rota_VP4_MID | e4v7iBE1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| D [auth AB] | Rota_VP4_MID | e4v7iAB1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| MA [auth BD] | Cellulase | e4v7iBD1 | A: alpha arrays | X: HAD domain-like | H: HAD domain-related | T: PIN domain-like | F: Cellulase | ECOD (v295) |
| LA [auth BC] | Rota_VP4_MID | e4v7iBC1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| KA [auth BB] | FlaF_Ig-like | e4v7iBB1 | A: alpha arrays | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: FlaF_Ig-like | ECOD (v295) |
| IA [auth A4] | Rota_VP4_MID | e4v7iA41 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| HA [auth A3] | Rota_VP4_MID | e4v7iA31 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| GA [auth A2] | Rota_VP4_MID | e4v7iA21 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| FA [auth A1] | PemK_toxin | e4v7iA11 | A: alpha arrays | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v295) |
| EA [auth A0] | Rota_VP4_MID | e4v7iA01 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| DA [auth AZ] | Rota_VP4_MID | e4v7iAZ1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| C [auth AA] | Rota_VP4_MID | e4v7iAA1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| CA [auth AY] | Rota_VP4_MID | e4v7iAY1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| BA [auth AX] | Rota_VP4_MID | e4v7iAX1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| AA [auth AW] | Rota_VP4_MID | e4v7iAW1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| Z [auth AV] | Rota_VP4_MID | e4v7iAV1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| Y [auth AU] | Rota_VP4_MID | e4v7iAU1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| X [auth AT] | Rota_VP4_MID | e4v7iAT1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| W [auth AS] | Rota_VP4_MID | e4v7iAS1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| V [auth AR] | Rota_VP4_MID | e4v7iAR1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| U [auth AQ] | PemK_toxin | e4v7iAQ1 | A: alpha arrays | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v295) |
| T [auth AP] | Ribosomal_L19 | e4v7iAP1 | A: alpha arrays | X: Repetitive alpha hairpins | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v295) |
| S [auth AO] | Rota_VP4_MID | e4v7iAO1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| R [auth AN] | Rota_VP4_MID | e4v7iAN1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| Q [auth AM] | Ribosomal_L19 | e4v7iAM1 | A: alpha arrays | X: Repetitive alpha hairpins | H: ferredoxin-like domain in periplasmic region of MacB | T: SH3 | F: Ribosomal_L19 | ECOD (v295) |
| P [auth AL] | PemK_toxin | e4v7iAL1 | A: alpha arrays | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v295) |
| O [auth AK] | Rota_VP4_MID | e4v7iAK1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| N [auth AJ] | Rota_VP4_MID | e4v7iAJ1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| M [auth AI] | Rota_VP4_MID | e4v7iAI1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| L [auth AH] | Rota_VP4_MID | e4v7iAH2 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| L [auth AH] | PemK_toxin | e4v7iAH1 | A: alpha arrays | X: SH3 | H: SH3 | T: SH3 | F: PemK_toxin | ECOD (v295) |
| K [auth AG] | Rota_VP4_MID | e4v7iAG1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
| J [auth AF] | Rota_VP4_MID | e4v7iAF1 | A: alpha arrays | X: VP4 membrane interaction domain | H: VP4 membrane interaction domain | T: VP4 membrane interaction domain | F: Rota_VP4_MID | ECOD (v295) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| I [auth AE] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
| H [auth AD] | PF00297 | Ribosomal protein L3 (Ribosomal_L3) | Ribosomal protein L3 | - | Family |
| G [auth A6] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | Domain | |
| G [auth A6] | PF00181 | Ribosomal Proteins L2, RNA binding N-terminal domain (Ribosomal_L2_N) | Ribosomal Proteins L2, RNA binding N-terminal domain | Domain | |
| F [auth A5] | PF00687 | Ribosomal protein L1p/L10e family (Ribosomal_L1) | Ribosomal protein L1p/L10e family | This family includes prokaryotic L1 and eukaryotic L10. | Domain |
| BB [auth BS] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| ZA [auth BQ] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| YA [auth BP] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| XA [auth BO] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| WA [auth BN] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
| VA [auth BM] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| UA [auth BL] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| TA [auth BK] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| SA [auth BJ] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
| RA [auth BI] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| QA [auth BH] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| OA [auth BF] | PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | |
| NA [auth BE] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| NA [auth BE] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| MA [auth BD] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| MA [auth BD] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| LA [auth BC] | PF07650 | KH domain (KH_2) | KH domain | Domain | |
| LA [auth BC] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
| KA [auth BB] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| IA [auth A4] | PF00444 | Ribosomal protein L36 (Ribosomal_L36) | Ribosomal protein L36 | Domain | |
| HA [auth A3] | PF01632 | Ribosomal protein L35 (Ribosomal_L35p) | Ribosomal protein L35 | - | Family |
| GA [auth A2] | PF00468 | Ribosomal protein L34 (Ribosomal_L34) | Ribosomal protein L34 | - | Family |
| FA [auth A1] | PF00471 | Ribosomal protein L33 (Ribosomal_L33) | Ribosomal protein L33 | - | Family |
| EA [auth A0] | PF01783 | Ribosomal L32p protein family (Ribosomal_L32p) | Ribosomal L32p protein family | - | Family |
| DA [auth AZ] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
| CA [auth AY] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
| BA [auth AX] | PF00830 | Ribosomal L28 family (Ribosomal_L28) | Ribosomal L28 family | - | Family |
| Z [auth AV] | PF01386 | Ribosomal L25p family (Ribosomal_L25p) | Ribosomal L25p family | Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress. | Domain |
| Y [auth AU] | PF17136 | Large ribosomal subunit protein uL24, C-terminal domain (ribosomal_L24) | Large ribosomal subunit protein uL24, C-terminal domain | This entry describes the C-terminal domain in large ribosomal subunit protein uL24 (also known as RPL26). RPL26 is one of the proteins from the large ribosomal subunit. In their mature form, these proteins have 103 to 150 amino-acid residues. RPL26 m ... | Domain |
| Y [auth AU] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| X [auth AT] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
| W [auth AS] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
| V [auth AR] | PF00829 | Ribosomal prokaryotic L21 protein (Ribosomal_L21p) | Ribosomal prokaryotic L21 protein | - | Family |
| U [auth AQ] | PF00453 | Ribosomal protein L20 (Ribosomal_L20) | Ribosomal protein L20 | - | Family |
| T [auth AP] | PF01245 | Ribosomal protein L19 (Ribosomal_L19) | Ribosomal protein L19 | - | Family |
| R [auth AN] | PF01196 | Ribosomal protein L17 (Ribosomal_L17) | Ribosomal protein L17 | - | Family |
| Q [auth AM] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | Domain | |
| P [auth AL] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | This family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. | Domain |
| N [auth AJ] | PF00572 | Ribosomal protein L13 (Ribosomal_L13) | Ribosomal protein L13 | - | Family |
| M [auth AI] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
| M [auth AI] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | Domain | |
| L [auth AH] | PF01281 | Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N) | Ribosomal protein L9, N-terminal domain | Domain | |
| L [auth AH] | PF03948 | Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C) | Ribosomal protein L9, C-terminal domain | Domain | |
| K [auth AG] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | Domain | |
| J [auth AF] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | Domain | |
| J [auth AF] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | General secretory pathway (Sec) | Protein translocase |














