Structure of the yeast coat nucleoporin complex, space group C2
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| E | SCOP2 Family | Coat nucleoporins Nup120/Nup160 NTD-like | 8090977 | 4005351 | SCOP2 (2022-06-29) |
| E | SCOP2 Family | Nup120 CTD-like | 8090979 | 4007717 | SCOP2 (2022-06-29) |
| E | SCOP2 Superfamily | Nucleoporin beta-propeller domain | 8090978 | 3000456 | SCOP2 (2022-06-29) |
| E | SCOP2 Superfamily | Scaffolding nucleoporins | 8090980 | 3002255 | SCOP2 (2022-06-29) |
| D | SCOP2B Superfamily | Coat and nuclear envelope proteins | 8054123 | 3002276 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Coat and nuclear envelope proteins | 8054129 | 3002276 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H [auth L] | SBP_bac_5 | e4xmmL1 | A: alpha arrays | X: Alpha-beta plaits | H: Protease propeptides/inhibitors | T: Protease propeptides/inhibitors | F: SBP_bac_5 | ECOD (v295.2) |
| G [auth H] | Pentaxin | e4xmmH1 | A: alpha arrays | X: Alpha-beta plaits | H: Protease propeptides/inhibitors | T: Protease propeptides/inhibitors | F: Pentaxin | ECOD (v295.2) |
| F | Pentaxin | e4xmmF1 | A: alpha arrays | X: Alpha-beta plaits | H: Protease propeptides/inhibitors | T: Protease propeptides/inhibitors | F: Pentaxin | ECOD (v295.2) |
| E | Pentaxin | e4xmmE1 | A: alpha arrays | X: Alpha-beta plaits | H: Protease propeptides/inhibitors | T: Protease propeptides/inhibitors | F: Pentaxin | ECOD (v295.2) |
| D | Nucleopor_Nup85 | e4xmmD1 | A: alpha arrays | X: Alpha-lytic protease prodomain-like | H: Glycosyl hydrolase domain | T: Glycosyl hydrolase domain | F: Nucleopor_Nup85 | ECOD (v295.2) |
| C | Pentaxin | e4xmmC1 | A: alpha arrays | X: Alpha-beta plaits | H: Protease propeptides/inhibitors | T: Protease propeptides/inhibitors | F: Pentaxin | ECOD (v295.2) |
| B | Nucleopor_Nup85 | e4xmmB1 | A: alpha arrays | X: Alpha-lytic protease prodomain-like | H: Glycosyl hydrolase domain | T: Glycosyl hydrolase domain | F: Nucleopor_Nup85 | ECOD (v295.2) |
| A | Pentaxin | e4xmmA1 | A: alpha arrays | X: Alpha-beta plaits | H: Protease propeptides/inhibitors | T: Protease propeptides/inhibitors | F: Pentaxin | ECOD (v295.2) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| H [auth L] | Antibody 57 | L-KAPPA | Homo sapiens (human) | IGKV1D-13*01, IGKV1-13*02, IGKV1D-13*02, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202643-0) |
| G [auth H] | Antibody 57 | VH-CH1 | Homo sapiens (human) | IGHV3-66*01, IGHV3-66*02, IGHV3-66*04, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202643-0) |
SAbDab2 Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| H [auth L] | Light Chain | IGKV1 | Kappa | Nucleoporin NUP85 | SAbDab (2026-11-06) |
| G [auth H] | Heavy Chain | IGHV3 | - | Nucleoporin NUP85 | SAbDab (2026-11-06) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF04121 | Nuclear pore protein 84 / 107 (Nup84_Nup100) | Nuclear pore protein 84 / 107 | - | Repeat | |
| PF23300 | Nucleoporin Nup120, HEAT repeats (HEAT_Nup120) | Nucleoporin Nup120, HEAT repeats | - | Repeat | |
| PF22114 | Nucleoporin NUP120, helical domain (NUP120_helical_2) | Nucleoporin NUP120, helical domain | This domain is found in Nucleoporin NUP120 from Saccharomyces cerevisiae and similar fungal sequences. NUP120 is a a component of the nuclear pore complex (NPC) involved in nuclear poly(A)+ RNA and pre-ribosome export, in GSP1 nuclear import, in NPC ... | Domain | |
| PF11715 | Nucleoporin Nup120/160, beta-propeller domain (Beta-prop_Nup120_160) | Nucleoporin Nup120/160, beta-propeller domain | - | Repeat | |
| PF07575 | Nup85 Nucleoporin (Nucleopor_Nup85) | Nup85 Nucleoporin | - | Repeat | |
| PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat | |
| PF12110 | Nucleoporin Nup96/Nup145C alpha-helical domain (Nup96) | Nucleoporin Nup96/Nup145C alpha-helical domain | - | Repeat | |
| PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |