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Structure of the yeast coat nucleoporin complex, space group C2


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ESCOP2 FamilyCoat nucleoporins Nup120/Nup160 NTD-like 8090977 4005351 SCOP2 (2022-06-29)
ESCOP2 FamilyNup120 CTD-like 8090979 4007717 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyNucleoporin beta-propeller domain 8090978 3000456 SCOP2 (2022-06-29)
ESCOP2 SuperfamilyScaffolding nucleoporins 8090980 3002255 SCOP2 (2022-06-29)
DSCOP2B SuperfamilyCoat and nuclear envelope proteins 8054123 3002276 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCoat and nuclear envelope proteins 8054129 3002276 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth L]SBP_bac_5e4xmmL1 A: alpha arraysX: Alpha-beta plaitsH: Protease propeptides/inhibitorsT: Protease propeptides/inhibitorsF: SBP_bac_5ECOD (v295.2)
G [auth H]Pentaxine4xmmH1 A: alpha arraysX: Alpha-beta plaitsH: Protease propeptides/inhibitorsT: Protease propeptides/inhibitorsF: PentaxinECOD (v295.2)
FPentaxine4xmmF1 A: alpha arraysX: Alpha-beta plaitsH: Protease propeptides/inhibitorsT: Protease propeptides/inhibitorsF: PentaxinECOD (v295.2)
EPentaxine4xmmE1 A: alpha arraysX: Alpha-beta plaitsH: Protease propeptides/inhibitorsT: Protease propeptides/inhibitorsF: PentaxinECOD (v295.2)
DNucleopor_Nup85e4xmmD1 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: Nucleopor_Nup85ECOD (v295.2)
CPentaxine4xmmC1 A: alpha arraysX: Alpha-beta plaitsH: Protease propeptides/inhibitorsT: Protease propeptides/inhibitorsF: PentaxinECOD (v295.2)
BNucleopor_Nup85e4xmmB1 A: alpha arraysX: Alpha-lytic protease prodomain-likeH: Glycosyl hydrolase domainT: Glycosyl hydrolase domainF: Nucleopor_Nup85ECOD (v295.2)
APentaxine4xmmA1 A: alpha arraysX: Alpha-beta plaitsH: Protease propeptides/inhibitorsT: Protease propeptides/inhibitorsF: PentaxinECOD (v295.2)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
H [auth L]Antibody 57 L-KAPPA Homo sapiens (human) IGKV1D-13*01, IGKV1-13*02, IGKV1D-13*02, IGKJ1*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202643-0)
G [auth H]Antibody 57 VH-CH1 Homo sapiens (human) IGHV3-66*01, IGHV3-66*02, IGHV3-66*04, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202643-0)

SAbDab2 Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
H [auth L]Light ChainIGKV1 KappaNucleoporin NUP85SAbDab (2026-11-06)
G [auth H]Heavy ChainIGHV3 -Nucleoporin NUP85SAbDab (2026-11-06)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04121Nuclear pore protein 84 / 107 (Nup84_Nup100)Nuclear pore protein 84 / 107- Repeat
PF23300Nucleoporin Nup120, HEAT repeats (HEAT_Nup120)Nucleoporin Nup120, HEAT repeats- Repeat
PF22114Nucleoporin NUP120, helical domain (NUP120_helical_2)Nucleoporin NUP120, helical domainThis domain is found in Nucleoporin NUP120 from Saccharomyces cerevisiae and similar fungal sequences. NUP120 is a a component of the nuclear pore complex (NPC) involved in nuclear poly(A)+ RNA and pre-ribosome export, in GSP1 nuclear import, in NPC ...This domain is found in Nucleoporin NUP120 from Saccharomyces cerevisiae and similar fungal sequences. NUP120 is a a component of the nuclear pore complex (NPC) involved in nuclear poly(A)+ RNA and pre-ribosome export, in GSP1 nuclear import, in NPC assembly and distribution, as well as in nuclear envelope organisation. This entry represents the alpha-helical domain of NUP120, which packs against the side of the beta-propeller Pfam:PF11715, located N-terminal of the protein [1-4].
Domain
PF11715Nucleoporin Nup120/160, beta-propeller domain (Beta-prop_Nup120_160)Nucleoporin Nup120/160, beta-propeller domain- Repeat
PF07575Nup85 Nucleoporin (Nucleopor_Nup85)Nup85 Nucleoporin- Repeat
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PF12110Nucleoporin Nup96/Nup145C alpha-helical domain (Nup96)Nucleoporin Nup96/Nup145C alpha-helical domain- Repeat
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth L]Antibody 57 light chain---
G [auth H]Antibody 57 heavy chain---
Nucleoporin NUP84
Nucleoporin NUP120
Nucleoporin NUP85
Nucleoporin SEH1
Nucleoporin NUP145
Protein transport protein SEC13