Structure of the yeast coat nucleoporin complex, space group P212121
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| D [auth E] | SCOP2B Superfamily | Scaffolding nucleoporins | 8090980 | 3002255 | SCOP2B (2022-06-29) |
| D [auth E] | SCOP2B Superfamily | Nucleoporin beta-propeller domain | 8090978 | 3000456 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Coat and nuclear envelope proteins | 8054129 | 3002276 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| G [auth H] | Pentaxin | e4xmnH1 | A: alpha arrays | X: Alpha-beta plaits | H: Protease propeptides/inhibitors | T: Protease propeptides/inhibitors | F: Pentaxin | ECOD (v295.2) |
| F [auth L] | SBP_bac_5 | e4xmnL1 | A: alpha arrays | X: Alpha-beta plaits | H: Protease propeptides/inhibitors | T: Protease propeptides/inhibitors | F: SBP_bac_5 | ECOD (v295.2) |
| E [auth D] | e4xmnD1 | A: alpha arrays | X: Alpha-lytic protease prodomain-like | H: Glycosyl hydrolase domain | T: Glycosyl hydrolase domain | F: | ECOD (v295.2) | |
| D [auth E] | SBP_bac_5 | e4xmnE1 | A: alpha arrays | X: Alpha-beta plaits | H: Protease propeptides/inhibitors | T: Protease propeptides/inhibitors | F: SBP_bac_5 | ECOD (v295.2) |
| C [auth F] | SBP_bac_5 | e4xmnF1 | A: alpha arrays | X: Alpha-beta plaits | H: Protease propeptides/inhibitors | T: Protease propeptides/inhibitors | F: SBP_bac_5 | ECOD (v295.2) |
| B | SBP_bac_1 | e4xmnB1 | A: alpha arrays | X: Alpha-lytic protease prodomain-like | H: Glycosyl hydrolase domain | T: Glycosyl hydrolase domain | F: SBP_bac_1 | ECOD (v295.2) |
| A | SBP_bac_5 | e4xmnA1 | A: alpha arrays | X: Alpha-beta plaits | H: Protease propeptides/inhibitors | T: Protease propeptides/inhibitors | F: SBP_bac_5 | ECOD (v295.2) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| G [auth H] | Antibody 87 | VH-CH1 | Homo sapiens (human) | IGHV3-21*01, IGHV3-21*02, IGHV3-64*04, IGHV3-66*01, IGHV3-66*02, IGHV3-66*04, IGHV3-74*01, IGHV3-74*02, IGHV3-23*04, IGHV3-21*04, IGHV3-21*03, IGHJ6*01, IGHJ6*02, IGHG1*01, IGHG1*02, IGHG1*04 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202643-0) |
| F [auth L] | Antibody 87 | L-KAPPA | Homo sapiens (human) | IGKV1D-13*01, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202643-0) |
SAbDab2 Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| G [auth H] | Heavy Chain | IGHV3 | - | Nucleoporin NUP120 | SAbDab (2026-11-06) |
| F [auth L] | Light Chain | IGKV1 | Kappa | Nucleoporin NUP120 | SAbDab (2026-11-06) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| D [auth E] | PF23300 | Nucleoporin Nup120, HEAT repeats (HEAT_Nup120) | Nucleoporin Nup120, HEAT repeats | - | Repeat |
| D [auth E] | PF22114 | Nucleoporin NUP120, helical domain (NUP120_helical_2) | Nucleoporin NUP120, helical domain | This domain is found in Nucleoporin NUP120 from Saccharomyces cerevisiae and similar fungal sequences. NUP120 is a a component of the nuclear pore complex (NPC) involved in nuclear poly(A)+ RNA and pre-ribosome export, in GSP1 nuclear import, in NPC ... | Domain |
| D [auth E] | PF11715 | Nucleoporin Nup120/160, beta-propeller domain (Beta-prop_Nup120_160) | Nucleoporin Nup120/160, beta-propeller domain | - | Repeat |
| C [auth F] | PF04121 | Nuclear pore protein 84 / 107 (Nup84_Nup100) | Nuclear pore protein 84 / 107 | - | Repeat |
| PF12110 | Nucleoporin Nup96/Nup145C alpha-helical domain (Nup96) | Nucleoporin Nup96/Nup145C alpha-helical domain | - | Repeat | |
| PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |