4YV9 | pdb_00004yv9

X-ray crystal structure of Streptococcus dysgalactiae SHP pheromone receptor Rgg2

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DN6_Mtasee4yv9D1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: N6_MtaseECOD (v294.1)
CN6_Mtasee4yv9C1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: N6_MtaseECOD (v294.1)
BN6_Mtasee4yv9B1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: N6_MtaseECOD (v294.1)
AN6_Mtasee4yv9A1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: S-adenosyl-L-methionine-dependent methyltransferasesF: N6_MtaseECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E, F, G, H
Cyclosporin A---
A, B, C, D
Transcriptional regulator - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR053163HTH-type transcriptional regulator Rgg-likeFamily
A, B, C, D
IPR010057HTH-type transcriptional regulator Rgg, C-terminal domainDomain
A, B, C, D
IPR001387Cro/C1-type, helix-turn-helix domainDomain
A, B, C, D
IPR010982Lambda repressor-like, DNA-binding domain superfamilyHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
E, F, G, H
ABA Parent Component: ALA

RESID:  AA0253 , AA0409

PSI-MOD :  S-(2-aminovinyl)-3-methyl-D-cysteine MOD:00258 , L-2-aminobutanoic acid (Glu) MOD:00819
E, F, G, H
BMT Parent Component: THR

RESID:  AA0253 , AA0409

E, F, G, H
DAL RESID:  AA0253 , AA0409 , AA0111 , AA0191

PSI-MOD :  S-(2-aminovinyl)-3-methyl-D-cysteine MOD:00258 , L-2-aminobutanoic acid (Glu) MOD:00819 , meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862
E, F, G, H
MLE Parent Component: LEU

RESID:  AA0253 , AA0409 , AA0111 , AA0191 , AA0337

PSI-MOD :  S-(2-aminovinyl)-3-methyl-D-cysteine MOD:00258 , L-2-aminobutanoic acid (Glu) MOD:00819 , meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , N-methyl-L-leucine MOD:00342
E, F, G, H
MVA Parent Component: VAL

RESID:  AA0253 , AA0409 , AA0111 , AA0191 , AA0337

E, F, G, H
SAR Parent Component: GLY

RESID:  AA0253 , AA0409 , AA0111 , AA0191 , AA0337 , AA0063

PSI-MOD :  S-(2-aminovinyl)-3-methyl-D-cysteine MOD:00258 , L-2-aminobutanoic acid (Glu) MOD:00819 , meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862 , N-methyl-L-leucine MOD:00342 , N-methylglycine MOD:00072
A, B, C, D
MSE Parent Component: MET

RESID:  AA0253 , AA0409 , AA0111 , AA0191 , AA0337 , AA0063