4Z3L | pdb_00004z3l

CRYSTAL STRUCTURE OF BIRCH POLLEN ALLERGEN BET V 1 MUTANT G26L, D69I, P90L, K97I

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4z3la_	Alpha and beta proteins (a+b)	TBP-like	Bet v1-like	Pathogenesis-related protein 10 (PR10)-like	Major tree pollen allergen	European white birch (Betula pendula ) [TaxId: 3505 ],	SCOPe (2.08)
D [auth E]	d4z3le_	Alpha and beta proteins (a+b)	TBP-like	Bet v1-like	Pathogenesis-related protein 10 (PR10)-like	Major tree pollen allergen	European white birch (Betula pendula ) [TaxId: 3505 ],	SCOPe (2.08)
F [auth D]	d4z3ld_	Alpha and beta proteins (a+b)	TBP-like	Bet v1-like	Pathogenesis-related protein 10 (PR10)-like	Major tree pollen allergen	European white birch (Betula pendula ) [TaxId: 3505 ],	SCOPe (2.08)
B	d4z3lb_	Alpha and beta proteins (a+b)	TBP-like	Bet v1-like	Pathogenesis-related protein 10 (PR10)-like	Major tree pollen allergen	European white birch (Betula pendula ) [TaxId: 3505 ],	SCOPe (2.08)
C	d4z3lc_	Alpha and beta proteins (a+b)	TBP-like	Bet v1-like	Pathogenesis-related protein 10 (PR10)-like	Major tree pollen allergen	European white birch (Betula pendula ) [TaxId: 3505 ],	SCOPe (2.08)
E [auth F]	d4z3lf_	Alpha and beta proteins (a+b)	TBP-like	Bet v1-like	Pathogenesis-related protein 10 (PR10)-like	Major tree pollen allergen	European white birch (Betula pendula ) [TaxId: 3505 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Bet v1-like	8036369	3000738	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	Bet v1-like	8036369	3000738	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Bet v1-like	8036369	3000738	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bet v1-like	8036369	3000738	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Bet v1-like	8036369	3000738	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Bet v1-like	8036369	3000738	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Polyketide_cyc2	e4z3lA1	A: a+b two layers	X: TBP-like	H: Bet v1-like (From Topology)	T: Bet v1-like	F: Polyketide_cyc2	ECOD (1.6)
D [auth E]	Polyketide_cyc2	e4z3lE1	A: a+b two layers	X: TBP-like	H: Bet v1-like (From Topology)	T: Bet v1-like	F: Polyketide_cyc2	ECOD (1.6)
F [auth D]	Polyketide_cyc2	e4z3lD1	A: a+b two layers	X: TBP-like	H: Bet v1-like (From Topology)	T: Bet v1-like	F: Polyketide_cyc2	ECOD (1.6)
B	Polyketide_cyc2	e4z3lB1	A: a+b two layers	X: TBP-like	H: Bet v1-like (From Topology)	T: Bet v1-like	F: Polyketide_cyc2	ECOD (1.6)
C	Polyketide_cyc2	e4z3lC1	A: a+b two layers	X: TBP-like	H: Bet v1-like (From Topology)	T: Bet v1-like	F: Polyketide_cyc2	ECOD (1.6)
E [auth F]	Polyketide_cyc2	e4z3lF1	A: a+b two layers	X: TBP-like	H: Bet v1-like (From Topology)	T: Bet v1-like	F: Polyketide_cyc2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.530.20	Alpha Beta	2-Layer Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 4	CATH (4.3.0)
D [auth E]	3.30.530.20	Alpha Beta	2-Layer Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 4	CATH (4.3.0)
F [auth D]	3.30.530.20	Alpha Beta	2-Layer Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 4	CATH (4.3.0)
B	3.30.530.20	Alpha Beta	2-Layer Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 4	CATH (4.3.0)
C	3.30.530.20	Alpha Beta	2-Layer Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 4	CATH (4.3.0)
E [auth F]	3.30.530.20	Alpha Beta	2-Layer Sandwich	Alpha-D-Glucose-1,6-Bisphosphate	Chain A, domain 4	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth D]	PF00407	Pathogenesis-related protein Bet v 1 family (Bet_v_1)	Pathogenesis-related protein Bet v 1 family	This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants [1]. In recent ye ...	This family is named after Bet v 1, the major birch pollen allergen. This protein belongs to family 10 of plant pathogenesis-related proteins (PR-10), cytoplasmic proteins of 15-17 kd that are wide-spread among dicotyledonous plants [1]. In recent years, a number of diverse plant proteins with low sequence similarity to Bet v 1 was identified. A classification by sequence similarity yielded several subfamilies related to PR-10 [2]: - Pathogenesis-related proteins PR-10: These proteins were identified as major tree pollen allergens in birch and related species (hazel, alder), as plant food allergens expressed in high levels in fruits, vegetables and seeds (apple, celery, hazelnut), and as pathogenesis-related proteins whose expression is induced by pathogen infection, wounding, or abiotic stress. Hyp-1 (Swiss:Q8H1L1), an enzyme involved in the synthesis of the bioactive naphthodianthrone hypericin in St. John's wort (Hypericum perforatum) also belongs to this family. Most of these proteins were found in dicotyledonous plants. In addition, related sequences were identified in monocots and conifers. - Cytokinin-specific binding proteins: These legume proteins bind cytokinin plant hormones [3]. - (S)-Norcoclaurine synthases are enzymes catalysing the condensation of dopamine and 4-hydroxyphenylacetaldehyde to (S)-norcoclaurine, the first committed step in the biosynthesis of benzylisoquinoline alkaloids such as morphine [4]. -Major latex proteins and ripening-related proteins are proteins of unknown biological function that were first discovered in the latex of opium poppy (Papaver somniferum) and later found to be upregulated during ripening of fruits such as strawberry and cucumber [4]. The occurrence of Bet v 1-related proteins is confined to seed plants with the exception of a cytokinin-binding protein from the moss Physcomitrella patens (Swiss:Q9AXI3).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth D]	Major pollen allergen Bet v 1-A	phosphoric ester hydrolase activity enzyme regulator activity phosphatase inhibitor activity catalytic activity, acting on a protein phosphatase activity phosphatase regulator activity hydrolase activity enzyme inhibitor activity phosphoprotein phosphatase activity molecular function inhibitor activity hydrolase activity, acting on ester bonds molecular function regulator activity protein phosphatase regulator activity protein phosphatase inhibitor activity catalytic activity phosphoric ester hydrolase activity enzyme regulator activity phosphatase inhibitor activity catalytic activity, acting on a protein phosphatase activity phosphatase regulator activity hydrolase activity enzyme inhibitor activity phosphoprotein phosphatase activity molecular function inhibitor activity hydrolase activity, acting on ester bonds molecular function regulator activity protein phosphatase regulator activity protein phosphatase inhibitor activity catalytic activity molecular transducer activity signaling receptor activity organic acid binding binding alcohol binding isoprenoid binding hormone binding ion binding abscisic acid binding anion binding lipid binding carboxylic acid binding monocarboxylic acid binding small molecule binding	cellular response to stimulus regulation of cellular process response to stimulus response to lipid abscisic acid-activated signaling pathway signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus cellular response to abscisic acid stimulus regulation of biological process cellular response to stimulus regulation of cellular process response to stimulus response to lipid abscisic acid-activated signaling pathway signaling hormone-mediated signaling pathway cell communication cellular response to endogenous stimulus response to hormone signal transduction cellular response to hormone stimulus cellular response to abscisic acid stimulus regulation of biological process response to abscisic acid response to alcohol response to endogenous stimulus biological regulation response to oxygen-containing compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to alcohol response to chemical cellular response to lipid cellular process defense response response to stress	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth D]	IPR024949	Bet v I type allergen	Family
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth D]	IPR000916	Bet v I/Major latex protein	Domain
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth D]	IPR050279	Plant defense and hormone signaling protein	Family
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth D]	IPR023393	START-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.