4ZGY

STRUCTURE of HUMAN ORNITHINE DECARBOXYLASE IN COMPLEX WITH A C-TERMINAL FRAGMENT OF ANTIZYME

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4zgyb_	Alpha and beta proteins (a+b)	Acyl-CoA N-acyltransferases (Nat)	Acyl-CoA N-acyltransferases (Nat)	Ornithine decarboxylase antizyme-like	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Alanine racemase C-terminal domain-like	8042328	3001044	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PLP-binding barrel	8043281	3000273	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	AZ1 domain-like	8082005	3002482	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Orn_DAP_Arg_deC_C	e4zgyA2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: Orn_DAP_Arg_deC_C	ECOD (1.6)
A	Orn_DAP_Arg_deC_N	e4zgyA1	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: Orn_DAP_Arg_deC_N	ECOD (1.6)
B	ODC_AZ	e4zgyB1	A: a+b three layers	X: Nat/Ivy	H: Acyl-CoA N-acyltransferases (Nat) (From Topology)	T: Acyl-CoA N-acyltransferases (Nat)	F: ODC_AZ	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.37.10	Mainly Beta	Beta Barrel	Lyase, Ornithine Decarboxylase	Chain A, domain 1	CATH (4.3.0)
A	3.20.20.10	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Alanine racemase	CATH (4.3.0)
B	3.40.630.60	Alpha Beta	3-Layer(aba) Sandwich	Aminopeptidase		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF02784	Pyridoxal-dependent decarboxylase, pyridoxal binding domain (Orn_Arg_deC_N)	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	These pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates This domain has a TIM barrel fold.	Domain
A	PF00278	Pyridoxal-dependent decarboxylase, C-terminal sheet domain (Orn_DAP_Arg_deC)	Pyridoxal-dependent decarboxylase, C-terminal sheet domain	These pyridoxal-dependent decarboxylases act on ornithine, lysine, arginine and related substrates.	Domain
B	PF02100	Ornithine decarboxylase antizyme (ODC_AZ)	Ornithine decarboxylase antizyme	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Ornithine decarboxylase	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity ornithine decarboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity	regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation regulation of cell population proliferation biological regulation positive regulation of biological process cellular process positive regulation of cellular process amine metabolic process metabolic process polyamine metabolic process biogenic amine metabolic process catabolic process regulation of biological process cell population proliferation regulation of cellular process positive regulation of cell population proliferation regulation of cell population proliferation biological regulation positive regulation of biological process cellular process positive regulation of cellular process amine metabolic process metabolic process polyamine metabolic process biogenic amine metabolic process catabolic process regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process macromolecule catabolic process regulation of primary metabolic process protein metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process biological process involved in interspecies interaction between organisms response to stimulus response to other organism response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus developmental process multicellular organism development multicellular organismal process anatomical structure development animal organ development kidney development renal system development system development oxoacid metabolic process amino acid metabolic process organic acid metabolic process alpha-amino acid metabolic process glutamine family amino acid metabolic process arginine metabolic process biogenic amine biosynthetic process putrescine metabolic process small molecule metabolic process putrescine biosynthetic process from arginine, via ornithine carboxylic acid metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process putrescine biosynthetic process biosynthetic process amine biosynthetic process polyamine biosynthetic process putrescine biosynthetic process from arginine	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
B	Ornithine decarboxylase antizyme 1	enzyme regulator activity molecular function inhibitor activity ornithine decarboxylase regulator activity molecular function regulator activity enzyme inhibitor activity ornithine decarboxylase inhibitor activity	amine metabolic process biogenic amine biosynthetic process biosynthetic process amine biosynthetic process polyamine biosynthetic process metabolic process cellular process polyamine metabolic process biogenic amine metabolic process viral gene expression viral process viral translational frameshifting viral translation regulation of cellular process amine metabolic process biogenic amine biosynthetic process biosynthetic process amine biosynthetic process polyamine biosynthetic process metabolic process cellular process polyamine metabolic process biogenic amine metabolic process viral gene expression viral process viral translational frameshifting viral translation regulation of cellular process catabolic process positive regulation of protein metabolic process positive regulation of biological process macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of biological process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process protein localization regulation of localization establishment of protein localization cellular localization nitrogen compound transport regulation of protein localization transport positive regulation of establishment of protein localization positive regulation of protein transport localization cellular macromolecule localization establishment of localization in cell positive regulation of intracellular transport regulation of intracellular transport regulation of transport regulation of establishment of protein localization intracellular transport regulation of protein transport establishment of localization positive regulation of transport protein transport regulation of cellular localization macromolecule localization positive regulation of protein localization regulation of intracellular protein transport positive regulation of intracellular protein transport intracellular protein transport	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR002433	Ornithine decarboxylase	Family
A	IPR029066	PLP-binding barrel	Homologous Superfamily
A	IPR022644	Orn/DAP/Arg decarboxylase 2, N-terminal	Domain
A	IPR022653	Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site	Binding Site
A	IPR022643	Orn/DAP/Arg decarboxylase 2, C-terminal	Domain
A	IPR009006	Alanine racemase/group IV decarboxylase, C-terminal	Homologous Superfamily
A	IPR000183	Ornithine/DAP/Arg decarboxylase	Family
A	IPR022657	Orn/DAP/Arg decarboxylase 2, conserved site	Conserved Site
B	IPR038581	Ornithine decarboxylase antizyme superfamily	Homologous Superfamily
B	IPR002993	Ornithine decarboxylase antizyme	Family
B	IPR016181	Acyl-CoA N-acyltransferase	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P11926	papilloma malignant colon neoplasm colorectal cancer HIV infectious disease skin cancer squamous papilloma skin neoplasm lung cancer malignant glioma oligodendroglioma astrocytic tumor plasma cell myeloma benign colon neoplasm sinusitis colorectal carcinoma papilloma malignant colon neoplasm colorectal cancer HIV infectious disease skin cancer squamous papilloma skin neoplasm lung cancer malignant glioma oligodendroglioma astrocytic tumor plasma cell myeloma benign colon neoplasm sinusitis colorectal carcinoma spina bifida dermatomyositis Female Facial Hirsutism invasive ductal breast carcinoma medulloblastoma ovarian cancer papillomatosis atypical teratoid rhabdoid tumor primitive neuroectodermal tumor colonic neoplasm diabetes mellitus glioblastoma human African trypanosomiasis large cell medulloblastoma malignant ependymoma myopathy pancreatic ductal adenocarcinoma pituitary cancer Barrett esophagus psoriasis cutaneous lupus erythematosus ulcerative colitis esophageal adenocarcinoma hypotrichosis
B	Pharos: P54368	atypical teratoid rhabdoid tumor lymphoplasmacytic lymphoma plasma cell myeloma diabetes mellitus ovarian cancer lung cancer pancreatic intraductal papillary-mucinous neoplasm

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.