Annotations: 5A1W

The structure of the COPI coat linkage II

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	SNARE-like	8082715	3001113	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ras-like P-loop GTPases	8089854	3002022	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ras-like P-loop GTPases	8089854	3002022	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Bromodomain	e5a1wH1	A: alpha arrays	X: Ribosomal protein S7	H: Ribosomal protein S7	T: Ribosomal protein S7	F: Bromodomain	ECOD (v295.2)
G		e5a1wG2	A: alpha arrays	X: Chlorophyll a-b binding protein	H: Chlorophyll a-b binding protein	T: Chlorophyll a-b binding protein	F:	ECOD (v295.2)
G		e5a1wG4	A: alpha arrays	X: HTH	H: HTH	T: winged helix domain	F:	ECOD (v295.2)
F		e5a1wF1	A: alpha arrays	X: Ribosomal protein S7	H: Ribosomal protein S7	T: Ribosomal protein S7	F:	ECOD (v295.2)
E	Glycos_transf_1	e5a1wE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Glycos_transf_1	ECOD (v295.2)
D	Bromodomain	e5a1wD1	A: alpha arrays	X: Ribosomal protein S7	H: Ribosomal protein S7	T: Ribosomal protein S7	F: Bromodomain	ECOD (v295.2)
C	Bromodomain	e5a1wC1	A: alpha arrays	X: Ribosomal protein S7	H: Ribosomal protein S7	T: Ribosomal protein S7	F: Bromodomain	ECOD (v295.2)
B	Bromodomain	e5a1wB1	A: alpha arrays	X: Ribosomal protein S7	H: Ribosomal protein S7	T: Ribosomal protein S7	F: Bromodomain	ECOD (v295.2)
A	Bromodomain	e5a1wA1	A: alpha arrays	X: Ribosomal protein S7	H: Ribosomal protein S7	T: Ribosomal protein S7	F: Bromodomain	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
H	PF01217	Clathrin adaptor complex small chain (Clat_adaptor_s)	Clathrin adaptor complex small chain		Domain
G	PF01602	Adaptin N terminal region (Adaptin_N)	Adaptin N terminal region	-	Repeat
G	PF14806	Coatomer beta subunit appendage platform (Coatomer_b_Cpla)	Coatomer beta subunit appendage platform	This family is found at the C-terminus of the coatamer beta subunit proteins (Beta-coat proteins). It is a platform domain on the appendage that carries a highly conserved tryptophan.	Domain
F	PF01217	Clathrin adaptor complex small chain (Clat_adaptor_s)	Clathrin adaptor complex small chain		Domain
E	PF01602	Adaptin N terminal region (Adaptin_N)	Adaptin N terminal region	-	Repeat
D	PF04053	COPA/B second beta-propeller (B-prop_COPA_B_2nd)	COPA/B second beta-propeller	-	Repeat
D	PF23953	COPA/B TPR domain (TPR_COPA_B)	COPA/B TPR domain	-	Repeat
D	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
C	PF04053	COPA/B second beta-propeller (B-prop_COPA_B_2nd)	COPA/B second beta-propeller	-	Repeat
C	PF23953	COPA/B TPR domain (TPR_COPA_B)	COPA/B TPR domain	-	Repeat
C	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H	COATOMER SUBUNIT DELTA	-	localization transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport adult locomotory behavior behavior multicellular organismal process adult behavior locomotory behavior Golgi localization organelle localization localization transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport adult locomotory behavior behavior multicellular organismal process adult behavior locomotory behavior Golgi localization organelle localization pigmentation hindbrain maturation central nervous system maturation multicellular organism development cerebellar Purkinje cell layer development metencephalon development anatomical structure development system development developmental process head development cerebellar cortex maturation cerebellum maturation animal organ development brain development cerebellar Purkinje cell layer maturation nervous system development developmental maturation cerebellar cortex development cerebellum development central nervous system development anatomical structure maturation animal gross anatomical part developmental process hindbrain development cellular localization establishment of localization in cell intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport	membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle COPI-coated vesicle intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle coated vesicle cytoplasm Golgi-associated vesicle vesicle Golgi apparatus membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle COPI-coated vesicle intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle coated vesicle cytoplasm Golgi-associated vesicle vesicle Golgi apparatus endomembrane system protein-containing complex vesicle coat membrane protein complex membrane coat bounding membrane of organelle vesicle membrane COPI vesicle coat membrane coated membrane COPI-coated vesicle membrane coated vesicle membrane cytoplasmic vesicle membrane Golgi-associated vesicle membrane organelle membrane Golgi membrane endoplasmic reticulum
G	COATOMER SUBUNIT BETA	structural molecule activity	localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport endoplasmic reticulum to Golgi vesicle-mediated transport	membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle COPI-coated vesicle intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle coated vesicle cytoplasm Golgi-associated vesicle vesicle Golgi apparatus membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle COPI-coated vesicle intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle coated vesicle cytoplasm Golgi-associated vesicle vesicle Golgi apparatus endomembrane system protein-containing complex vesicle coat membrane protein complex membrane coat bounding membrane of organelle vesicle membrane COPI vesicle coat membrane coated membrane COPI-coated vesicle membrane coated vesicle membrane cytoplasmic vesicle membrane Golgi-associated vesicle membrane organelle membrane Golgi membrane cytosol cell periphery plasma membrane endoplasmic reticulum-Golgi intermediate compartment
F	COATOMER SUBUNIT ZETA-1	-	localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	membrane-bounded organelle protein-containing complex intracellular anatomical structure vesicle coat intracellular vesicle membrane protein complex endomembrane system COPI-coated vesicle membrane coat intracellular organelle cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle membrane-bounded organelle protein-containing complex intracellular anatomical structure vesicle coat intracellular vesicle membrane protein complex endomembrane system COPI-coated vesicle membrane coat intracellular organelle cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle coated vesicle Golgi-associated vesicle vesicle COPI vesicle coat Golgi apparatus membrane coated membrane intracellular membrane-bounded organelle COPI-coated vesicle membrane coated vesicle membrane cytoplasmic vesicle membrane organelle Golgi-associated vesicle membrane cytoplasm organelle membrane Golgi membrane
E	COATOMER SUBUNIT GAMMA-1	structural molecule activity	localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport Golgi localization establishment of organelle localization cellular localization establishment of Golgi localization organelle localization establishment of localization in cell establishment of protein localization localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport Golgi localization establishment of organelle localization cellular localization establishment of Golgi localization organelle localization establishment of localization in cell establishment of protein localization intracellular transport protein transport macromolecule localization intracellular protein localization intracellular protein transport secretion establishment of protein localization to extracellular region export from cell protein secretion protein localization to extracellular region secretion by cell endoplasmic reticulum to Golgi vesicle-mediated transport organelle transport along microtubule microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system protein-containing complex vesicle coat intracellular vesicle membrane protein complex COPI-coated vesicle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system protein-containing complex vesicle coat intracellular vesicle membrane protein complex COPI-coated vesicle membrane coat bounding membrane of organelle vesicle membrane cytoplasmic vesicle coated vesicle Golgi-associated vesicle vesicle COPI vesicle coat membrane coated membrane COPI-coated vesicle membrane coated vesicle membrane cytoplasmic vesicle membrane Golgi-associated vesicle membrane organelle membrane Golgi membrane cytosol endoplasmic reticulum-Golgi intermediate compartment endoplasmic reticulum
D	COATOMER SUBUNIT BETA'	protein binding binding kinase binding protein kinase C binding enzyme binding protein kinase binding structural molecule activity	localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum endoplasmic reticulum to Golgi vesicle-mediated transport	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system protein-containing complex vesicle coat intracellular vesicle membrane protein complex COPI-coated vesicle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system protein-containing complex vesicle coat intracellular vesicle membrane protein complex COPI-coated vesicle membrane coat bounding membrane of organelle vesicle membrane cytoplasmic vesicle coated vesicle Golgi-associated vesicle vesicle COPI vesicle coat membrane coated membrane COPI-coated vesicle membrane coated vesicle membrane cytoplasmic vesicle membrane Golgi-associated vesicle membrane organelle membrane Golgi membrane cytosol
C	COATOMER SUBUNIT ALPHA	RNA binding binding nucleic acid binding mRNA binding structural molecule activity	localization protein localization to cell leading edge macromolecule localization intracellular protein localization protein localization to axon cellular localization transport establishment of localization in cell intracellular transport cellular process endoplasmic reticulum to Golgi vesicle-mediated transport establishment of localization Golgi vesicle transport vesicle-mediated transport localization protein localization to cell leading edge macromolecule localization intracellular protein localization protein localization to axon cellular localization transport establishment of localization in cell intracellular transport cellular process endoplasmic reticulum to Golgi vesicle-mediated transport establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport establishment of protein localization protein transport intracellular protein transport retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum multicellular organismal process regulation of body fluid levels system process secretion by tissue pancreatic juice secretion digestive system process secretion biological regulation body fluid secretion digestion regulation of biological quality	membrane-bounded organelle protein-containing complex intracellular anatomical structure vesicle coat intracellular vesicle membrane protein complex endomembrane system COPI-coated vesicle membrane coat intracellular organelle cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle membrane-bounded organelle protein-containing complex intracellular anatomical structure vesicle coat intracellular vesicle membrane protein complex endomembrane system COPI-coated vesicle membrane coat intracellular organelle cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle coated vesicle Golgi-associated vesicle vesicle COPI vesicle coat Golgi apparatus membrane coated membrane intracellular membrane-bounded organelle COPI-coated vesicle membrane coated vesicle membrane cytoplasmic vesicle membrane organelle Golgi-associated vesicle membrane cytoplasm organelle membrane growth cone axon cell projection distal axon neuron projection plasma membrane bounded cell projection site of polarized growth extracellular region Golgi membrane cell body
A, B	ADP-RIBOSYLATION FACTOR 1	pyrophosphatase activity GTPase activity G protein activity ribonucleoside triphosphate phosphatase activity molecular function regulator activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding pyrophosphatase activity GTPase activity G protein activity ribonucleoside triphosphate phosphatase activity molecular function regulator activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	positive regulation of organelle organization regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization regulation of developmental process positive regulation of biological process cellular component organization positive regulation of developmental process anatomical structure development regulation of mitochondrial fusion cellular component organization or biogenesis mitochondrial fusion positive regulation of cellular process regulation of anatomical structure morphogenesis positive regulation of organelle organization regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization regulation of developmental process positive regulation of biological process cellular component organization positive regulation of developmental process anatomical structure development regulation of mitochondrial fusion cellular component organization or biogenesis mitochondrial fusion positive regulation of cellular process regulation of anatomical structure morphogenesis positive regulation of mitochondrial fusion mitochondrion organization developmental process regulation of biological process biological regulation regulation of organelle organization organelle fusion anatomical structure morphogenesis organelle organization regulation of mitochondrion organization cellular process cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism Golgi to plasma membrane transport post-Golgi vesicle-mediated transport localization within membrane vesicle-mediated transport vesicle-mediated transport to the plasma membrane Golgi vesicle transport fatty acid metabolic process oxoacid metabolic process ketone metabolic process regulation of lipid metabolic process carboxylic acid metabolic process primary metabolic process regulation of ketone metabolic process regulation of primary metabolic process regulation of small molecule metabolic process regulation of fatty acid metabolic process small molecule metabolic process monocarboxylic acid metabolic process regulation of metabolic process lipid metabolic process organelle fission mitochondrial fission regulation of mitochondrial fission positive regulation of mitochondrial fission protein localization to Golgi membrane protein localization to Golgi apparatus protein localization to organelle protein localization to membrane endoplasmic reticulum to Golgi vesicle-mediated transport regulation of Golgi organization Golgi organization endomembrane system organization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system cytosol cell periphery plasma membrane membrane organelle membrane contact site

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
H	IPR011012	Longin-like domain superfamily	Homologous Superfamily
H	IPR027059	Coatomer delta subunit	Family
H	IPR022775	AP complex, mu/sigma subunit	Domain
H	IPR036168	AP-2 complex subunit mu, C-terminal superfamily	Homologous Superfamily
H	IPR028565	Mu homology domain	Domain
G	IPR016460	Coatomer beta subunit (COPB1)	Family
G	IPR016024	Armadillo-type fold	Homologous Superfamily
G	IPR002553	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Domain
G	IPR011710	Coatomer beta subunit, C-terminal	Domain
G	IPR029446	Coatomer beta subunit, appendage platform domain	Domain
G	IPR011989	Armadillo-like helical	Homologous Superfamily
F	IPR000804	Clathrin adaptor complex, small chain	Conserved Site
F	IPR022775	AP complex, mu/sigma subunit	Domain
F	IPR039652	Coatomer subunit zeta	Family
F	IPR011012	Longin-like domain superfamily	Homologous Superfamily
E	IPR016024	Armadillo-type fold	Homologous Superfamily
E	IPR002553	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Domain
E	IPR013040	Coatomer, gamma subunit, appendage, Ig-like subdomain	Domain
E	IPR013041	Clathrin adaptor, appendage, Ig-like subdomain superfamily	Homologous Superfamily
E	IPR011989	Armadillo-like helical	Homologous Superfamily
E	IPR032154	Coatomer subunit gamma, C-terminal	Domain
E	IPR017106	Coatomer gamma subunit	Family
E	IPR037067	Coatomer, gamma subunit, appendage domain superfamily	Homologous Superfamily
E	IPR012295	TBP domain superfamily	Homologous Superfamily
E	IPR009028	Coatomer/calthrin adaptor appendage, C-terminal subdomain	Homologous Superfamily
D	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
D	IPR016453	Coatomer beta' subunit (COPB2)	Family
D	IPR050844	Coatomer complex subunit	Family
D	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
D	IPR001680	WD40 repeat	Repeat
D	IPR006692	COPA/B, second beta-propeller domain	Domain
D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
D	IPR056176	COPA/B, TPR domain	Domain
C	IPR019775	WD40 repeat, conserved site	Conserved Site
C	IPR016391	Coatomer subunit alpha	Family
C	IPR020472	PAC1/LIS1-like, WD-40 repeat	Repeat
C	IPR010714	Coatomer, alpha subunit, C-terminal	Domain
C	IPR006692	COPA/B, second beta-propeller domain	Domain
C	IPR047312	Coatomer subunit alpha, WD Associated Region	Domain
C	IPR011048	Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily	Homologous Superfamily
C	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
C	IPR056176	COPA/B, TPR domain	Domain
C	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
C	IPR050844	Coatomer complex subunit	Family
C	IPR001680	WD40 repeat	Repeat
A, B	IPR005225	Small GTP-binding domain	Domain
A, B	IPR045872	ADP-ribosylation factor 1-5	Family
A, B	IPR024156	Small GTPase superfamily, ARF type	Family
A, B	IPR006689	Small GTPase superfamily, ARF/SAR type	Family
A, B	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily