5EJC | pdb_00005ejc

Crystal structural of the TSC1-TBC1D7 complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e5ejcB1	A: HTH	X: SH3	H: SH3	T: HHH	F:	ECOD (20:10:01)
A		e5ejcA1	A: HTH	X: SH3	H: SH3	T: HHH	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.10.750	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Ypt/Rab-GAP domain of gyp1p, domain 1	CATH (4.3.0)
B	1.10.8.680	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
B	1.10.472.80	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)
A	1.10.10.750	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Ypt/Rab-GAP domain of gyp1p, domain 1	CATH (4.3.0)
A	1.10.8.680	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
A	1.10.472.80	Mainly Alpha	Orthogonal Bundle	Cyclin A	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00566	Rab-GTPase-TBC domain (RabGAP-TBC)	Rab-GTPase-TBC domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D, E, F	Hamartin	molecular function inhibitor activity molecular function regulator activity ATPase inhibitor activity ATPase regulator activity protein binding binding protein-folding chaperone binding Hsp90 protein binding heat shock protein binding Hsp70 protein binding protein folding chaperone	regulation of protein stability biological regulation regulation of biological quality protein stabilization response to stimulus immune response immune system process adaptive immune response cell population proliferation cellular process developmental process heart development multicellular organismal process cellular developmental process regulation of protein stability biological regulation regulation of biological quality protein stabilization response to stimulus immune response immune system process adaptive immune response cell population proliferation cellular process developmental process heart development multicellular organismal process cellular developmental process cardiac muscle tissue development cardiac muscle cell differentiation animal organ development muscle cell differentiation tissue development cardiocyte differentiation striated muscle tissue development circulatory system development muscle structure development multicellular organism development cell differentiation anatomical structure development striated muscle cell differentiation muscle tissue development system development negative regulation of ATP-dependent activity regulation of ATP-dependent activity regulation of molecular function negative regulation of molecular function regulation of cellular process regulation of cellular component organization positive regulation of cellular component organization cell-substrate junction assembly positive regulation of cell-substrate junction organization positive regulation of biological process cellular component organization cellular component biogenesis cell adhesion cellular component assembly cell junction assembly positive regulation of cell-substrate adhesion regulation of cell-substrate junction organization cellular component organization or biogenesis positive regulation of cellular process focal adhesion assembly regulation of biological process positive regulation of focal adhesion assembly positive regulation of cellular component biogenesis regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of cell adhesion cell-substrate adhesion positive regulation of cell-matrix adhesion regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly cell junction organization cell-matrix adhesion regulation of cell-matrix adhesion cell-substrate junction organization regulation of focal adhesion assembly regulation of cell-substrate junction assembly cellular response to stimulus cellular response to nutrient levels response to nutrient levels cellular response to stress response to stress response to starvation cellular response to starvation embryonic epithelial tube formation chordate embryonic development tube formation embryo development epithelial tube formation tube morphogenesis primary neural tube formation embryo development ending in birth or egg hatching epithelial tube morphogenesis morphogenesis of embryonic epithelium epithelium development neural tube development tube development embryonic morphogenesis morphogenesis of an epithelium nervous system development anatomical structure morphogenesis tissue morphogenesis neural tube closure neural tube formation anatomical structure formation involved in morphogenesis tube closure head development forebrain development brain development pallium development cerebral cortex development central nervous system development telencephalon development negative regulation of signaling signaling negative regulation of intracellular signal transduction negative regulation of biological process regulation of signal transduction negative regulation of cell communication intracellular signal transduction cell communication negative regulation of TOR signaling regulation of intracellular signal transduction negative regulation of cellular process signal transduction TOR signaling regulation of signaling regulation of TOR signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication kidney development renal system development hippocampus development limbic system development adult locomotory behavior behavior adult behavior locomotory behavior immunological memory formation process cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation cell activation involved in immune response leukocyte activation memory T cell differentiation T cell activation involved in immune response T cell activation leukocyte activation involved in immune response T cell differentiation lymphocyte activation involved in immune response hemopoiesis cell activation T cell differentiation involved in immune response immune effector process immunological memory process leukocyte differentiation regulation of cytoskeleton organization regulation of actin filament-based process regulation of actin filament bundle assembly actin filament bundle organization actin filament-based process stress fiber assembly regulation of actin filament organization actin cytoskeleton organization actomyosin structure organization actin filament organization regulation of organelle organization regulation of stress fiber assembly organelle organization contractile actin filament bundle assembly regulation of actomyosin structure organization regulation of actin cytoskeleton organization actin filament bundle assembly regulation of supramolecular fiber organization supramolecular fiber organization cytoskeleton organization negative regulation of catabolic process catabolic process macroautophagy negative regulation of metabolic process autophagy regulation of catabolic process regulation of autophagy negative regulation of macroautophagy regulation of macroautophagy negative regulation of autophagy metabolic process process utilizing autophagic mechanism regulation of metabolic process synapse organization localization transport monoatomic ion transport potassium ion transport monoatomic cation transport establishment of localization metal ion transport response to decreased oxygen levels cellular response to chemical stimulus cellular response to oxygen levels response to chemical response to oxygen levels cellular response to decreased oxygen levels response to abiotic stimulus negative regulation of cell population proliferation regulation of cell population proliferation response to hormone response to endogenous stimulus response to peptide hormone response to insulin response to oxygen-containing compound response to nitrogen compound negative regulation of TORC1 signaling regulation of TORC1 signaling TORC1 signaling system process learning learning or memory nervous system process cognition associative learning activation of GTPase activity positive regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity myelination axon ensheathment ensheathment of neurons cell cycle regulation of cell cycle cell projection organization negative regulation of cell size regulation of cellular component size regulation of cell size regulation of anatomical structure size	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium membrane ciliary transition zone membrane-bounded organelle organelle cilium intracellular anatomical structure cytoplasm cytosol protein-containing complex cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium membrane ciliary transition zone membrane-bounded organelle organelle cilium intracellular anatomical structure cytoplasm cytosol protein-containing complex protein folding chaperone complex intracellular protein-containing complex vacuolar membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle lysosomal membrane organelle membrane lysosome perinuclear region of cytoplasm intracellular membraneless organelle ciliary basal body microtubule organizing center cytoskeleton membraneless organelle microtubule cytoskeleton TSC1-TSC2 complex cell periphery cell cortex plasma membrane lipid droplet postsynaptic density postsynapse neuron to neuron synapse postsynaptic specialization synapse cell junction asymmetric synapse nucleus
A, B	TBC1 domain family member 7	small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity protein-containing complex binding TSC1-TSC2 complex binding	cellular response to stimulus cellular response to nutrient levels response to nutrient levels response to stimulus cellular response to stress response to stress cellular process response to starvation cellular response to starvation regulation of cellular process negative regulation of signaling signaling negative regulation of intracellular signal transduction negative regulation of biological process cellular response to stimulus cellular response to nutrient levels response to nutrient levels response to stimulus cellular response to stress response to stress cellular process response to starvation cellular response to starvation regulation of cellular process negative regulation of signaling signaling negative regulation of intracellular signal transduction negative regulation of biological process regulation of signal transduction negative regulation of cell communication intracellular signal transduction cell communication negative regulation of TOR signaling regulation of intracellular signal transduction negative regulation of cellular process signal transduction TOR signaling regulation of signaling regulation of biological process regulation of TOR signaling negative regulation of response to stimulus biological regulation negative regulation of signal transduction regulation of response to stimulus regulation of cell communication response to endogenous stimulus response to growth factor negative regulation of TORC1 signaling regulation of TORC1 signaling TORC1 signaling positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity activation of GTPase activity regulation of protein modification process positive regulation of protein metabolic process positive regulation of biological process regulation of protein ubiquitination positive regulation of post-translational protein modification regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process protein ubiquitination positive regulation of macromolecule metabolic process protein metabolic process regulation of protein modification by small protein conjugation or removal protein modification process positive regulation of cellular process positive regulation of protein modification by small protein conjugation or removal positive regulation of protein ubiquitination regulation of post-translational protein modification regulation of protein metabolic process primary metabolic process regulation of macromolecule metabolic process macromolecule modification metabolic process macromolecule metabolic process post-translational protein modification regulation of metabolic process protein modification by small protein conjugation protein modification by small protein conjugation or removal regulation of cellular component organization cell projection organization negative regulation of organelle assembly plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization negative regulation of plasma membrane bounded cell projection assembly cellular component assembly cilium assembly cellular component organization or biogenesis negative regulation of cell projection organization cilium organization organelle assembly plasma membrane bounded cell projection organization negative regulation of cellular component organization regulation of cell projection organization regulation of cell projection assembly regulation of cellular component biogenesis regulation of organelle organization regulation of plasma membrane bounded cell projection assembly organelle organization regulation of cilium assembly negative regulation of organelle organization regulation of organelle assembly negative regulation of cilium assembly cell projection assembly regulation of plasma membrane bounded cell projection organization	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle protein-containing complex TSC1-TSC2 complex cytosol vacuolar membrane membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle protein-containing complex TSC1-TSC2 complex cytosol vacuolar membrane membrane lytic vacuole vacuole lytic vacuole membrane bounding membrane of organelle lysosomal membrane organelle membrane lysosome intracellular membraneless organelle cilium plasma membrane bounded cell projection ciliary basal body cell projection microtubule organizing center cytoskeleton membraneless organelle microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D, E, F	IPR007483	Hamartin	Family
A, B	IPR035969	Rab-GAP-TBC domain superfamily	Homologous Superfamily
A, B	IPR043039	TBC1 domain family member 7, domain 2	Homologous Superfamily
A, B	IPR039842	TBC1 domain family member 7	Family
A, B	IPR000195	Rab-GAP-TBC domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D, E, F	Pharos: Q92574	tuberous sclerosis lung lymphangioleiomyomatosis squamous cell carcinoma renal cell carcinoma epilepsy progressive myoclonus epilepsy isolated focal cortical dysplasia type II tuberous sclerosis 1 Cognition Disorders dentatorubral-pallidoluysian atrophy West syndrome brain disease chromophobe renal cell carcinoma collecting duct carcinoma lymphangioleiomyomatosis tuberous sclerosis lung lymphangioleiomyomatosis squamous cell carcinoma renal cell carcinoma epilepsy progressive myoclonus epilepsy isolated focal cortical dysplasia type II tuberous sclerosis 1 Cognition Disorders dentatorubral-pallidoluysian atrophy West syndrome brain disease chromophobe renal cell carcinoma collecting duct carcinoma lymphangioleiomyomatosis developmental and epileptic encephalopathy sarcomatoid renal cell carcinoma visual epilepsy papillary renal cell carcinoma intellectual disability malignant ependymoma neoplasm angiomyolipoma urinary bladder neoplasm atypical teratoid rhabdoid tumor oral cavity neoplasm hepatocellular carcinoma large cell medulloblastoma malignant glioma action myoclonus-renal failure syndrome urinary bladder cancer ovarian cancer renal carcinoma bladder benign neoplasm cancer glioblastoma clear cell renal carcinoma Spasmus nutans Ehlers-Danlos syndrome adult hepatocellular carcinoma urinary bladder carcinoma autism benign urinary system neoplasm bladder carcinoma in situ cholangiocarcinoma
A, B	Pharos: Q9P0N9	acute myeloid leukemia Macrocephaly ovarian cancer tuberculosis hydrocephalus macrocephaly/megalencephaly syndrome, autosomal recessive pancreatic ductal adenocarcinoma invasive ductal breast carcinoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.