Crystal Structure of APO MenD from M. tuberculosis - P212121
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D [auth B] | Lipoxygenase | e5eryB2 | A: a/b three-layered sandwiches | X: Alkaline phosphatase-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Lipoxygenase | ECOD (v294.1) |
| D [auth B] | e5eryB4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: | ECOD (v294.1) | |
| D [auth B] | Ribos_L4_asso_C | e5eryB3 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribos_L4_asso_C | ECOD (v294.1) |
| C | Lipoxygenase | e5eryC1 | A: a/b three-layered sandwiches | X: Alkaline phosphatase-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Lipoxygenase | ECOD (v294.1) |
| C | e5eryC3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: | ECOD (v294.1) | |
| C | Ribos_L4_asso_C | e5eryC4 | A: a/b three-layered sandwiches | X: Rubredoxin-like | H: Ferritin/Heme oxygenase | T: Heme oxygenase/Ribonucleotide reductase | F: Ribos_L4_asso_C | ECOD (v294.1) |
| B [auth D] | Lipoxygenase | e5eryD1 | A: a/b three-layered sandwiches | X: Alkaline phosphatase-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Lipoxygenase | ECOD (v294.1) |
| B [auth D] | e5eryD3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: | ECOD (v294.1) | |
| A | Lipoxygenase | e5eryA1 | A: a/b three-layered sandwiches | X: Alkaline phosphatase-like | H: Rossmann-related | T: FAD/NAD(P)-binding domain | F: Lipoxygenase | ECOD (v294.1) |
| A | e5eryA3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D [auth B] | 3.40.50.970 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | CATH (utative) |
| C | 3.40.50.970 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | CATH (utative) |
| B [auth D] | 3.40.50.970 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | CATH (4.3.0) |
| A | 3.40.50.970 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A, B [auth D], C, D [auth B] | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain (TPP_enzyme_N) | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A, B [auth D], C, D [auth B] | IPR012001 | Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain | Domain |
| A, B [auth D], C, D [auth B] | IPR004433 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase | Family |
| A, B [auth D], C, D [auth B] | IPR029061 | Thiamin diphosphate-binding fold | Homologous Superfamily |














