5F3E
Crystal structure of human KDM4A in complex with compound 54a
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d5f3ea_ | All beta proteins | Double-stranded beta-helix | Clavaminate synthase-like | Jumonji domain / Histone demethylase core | JMJD2A core | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
C | d5f3ec_ | All beta proteins | Double-stranded beta-helix | Clavaminate synthase-like | Jumonji domain / Histone demethylase core | JMJD2A core | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
D | d5f3ed_ | All beta proteins | Double-stranded beta-helix | Clavaminate synthase-like | Jumonji domain / Histone demethylase core | JMJD2A core | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d5f3eb_ | All beta proteins | Double-stranded beta-helix | Clavaminate synthase-like | Jumonji domain / Histone demethylase core | JMJD2A core | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF02373,PF02375 | e5f3eA1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF02373,PF02375 | ECOD (1.6) |
C | PF02373,PF02375 | e5f3eC1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF02373,PF02375 | ECOD (1.6) |
D | PF02373,PF02375 | e5f3eD1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF02373,PF02375 | ECOD (1.6) |
B | PF02373,PF02375 | e5f3eB1 | A: beta sandwiches | X: jelly-roll | H: Double-stranded beta-helix (From Topology) | T: Double-stranded beta-helix | F: PF02373,PF02375 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.650 | Mainly Beta | Sandwich | Jelly Rolls | Cupin | CATH (4.3.0) |
C | 2.60.120.650 | Mainly Beta | Sandwich | Jelly Rolls | Cupin | CATH (4.3.0) |
D | 2.60.120.650 | Mainly Beta | Sandwich | Jelly Rolls | Cupin | CATH (4.3.0) |
B | 2.60.120.650 | Mainly Beta | Sandwich | Jelly Rolls | Cupin | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02373 | JmjC domain, hydroxylase (JmjC) | JmjC domain, hydroxylase | The JmjC domain belongs to the Cupin superfamily [3]. JmjC-domain proteins may be protein hydroxylases that catalyse a novel histone modification [4]. This is confirmed to be a hydroxylase: the human JmjC protein named Tyw5p unexpectedly acts in the ... | Domain | |
PF02375 | jmjN domain (JmjN) | jmjN domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001965 | Zinc finger, PHD-type | Domain | |
IPR002999 | Tudor domain | Domain | |
IPR047479 | Lysine-specific demethylase 4A, first Tudor domain | Domain | |
IPR003347 | JmjC domain | Domain | |
IPR003349 | JmjN domain | Domain | |
IPR011011 | Zinc finger, FYVE/PHD-type | Homologous Superfamily | |
IPR047481 | Lysine-specific demethylase 4A, second Tudor domain | Domain | |
IPR047482 | Lysine-specific demethylase 4A, extended PHD finger | Domain | |
IPR034732 | Extended PHD (ePHD) domain | Domain | |
IPR013083 | Zinc finger, RING/FYVE/PHD-type | Homologous Superfamily | |
IPR040477 | Lysine-specific demethylase 4-like, Tudor domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
O75164 | :