Native XFEL structure of photosystem II (two flash dataset)
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| J [auth K] | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8088607 | 3001585 | SCOP2B (2022-06-29) |
| DA [auth k] | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8088607 | 3001585 | SCOP2B (2022-06-29) |
| I [auth J] | SCOP2B Superfamily | Photosystem II reaction center protein J, PsbJ | 8099970 | 3001534 | SCOP2B (2022-06-29) |
| CA [auth j] | SCOP2B Superfamily | Photosystem II reaction center protein J, PsbJ | 8099970 | 3001534 | SCOP2B (2022-06-29) |
| H [auth I] | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8098486 | 3001590 | SCOP2B (2022-06-29) |
| BA [auth i] | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8098486 | 3001590 | SCOP2B (2022-06-29) |
| G [auth H] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8098552 | 3001547 | SCOP2B (2022-06-29) |
| AA [auth h] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8098552 | 3001547 | SCOP2B (2022-06-29) |
| Z [auth f] | SCOP2B Superfamily | Cytochrome b559 subunits | 8098484 | 3001602 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Cytochrome b559 subunits | 8098484 | 3001602 | SCOP2B (2022-06-29) |
| Y [auth e] | SCOP2B Superfamily | Cytochrome b559 subunits | 8098482 | 3001602 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Cytochrome b559 subunits | 8098482 | 3001602 | SCOP2B (2022-06-29) |
| X [auth d] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8097554 | 3000736 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8097554 | 3000736 | SCOP2B (2022-06-29) |
| W [auth c] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097552 | 3001674 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097552 | 3001674 | SCOP2B (2022-06-29) |
| V [auth b] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097548 | 3001674 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097548 | 3001674 | SCOP2B (2022-06-29) |
| S [auth Z] | SCOP2B Superfamily | PsbZ-like | 8093510 | 3001624 | SCOP2B (2022-06-29) |
| MA [auth z] | SCOP2B Superfamily | PsbZ-like | 8093510 | 3001624 | SCOP2B (2022-06-29) |
| R [auth Y] | SCOP2B Superfamily | Photosystem II reaction center protein Ycf12 | 8093135 | 3002680 | SCOP2B (2022-06-29) |
| LA [auth y] | SCOP2B Superfamily | Photosystem II reaction center protein Ycf12 | 8093135 | 3002680 | SCOP2B (2022-06-29) |
| N [auth T] | SCOP2B Superfamily | Photosystem II reaction center protein T, PsbT | 8101519 | 3001561 | SCOP2B (2022-06-29) |
| HA [auth t] | SCOP2B Superfamily | Photosystem II reaction center protein T, PsbT | 8101519 | 3001561 | SCOP2B (2022-06-29) |
| M [auth O] | SCOP2B Superfamily | OMPA barrel-like | 8097550 | 3000208 | SCOP2B (2022-06-29) |
| GA [auth o] | SCOP2B Superfamily | OMPA barrel-like | 8097550 | 3000208 | SCOP2B (2022-06-29) |
| L [auth M] | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8087180 | 3001573 | SCOP2B (2022-06-29) |
| FA [auth m] | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8087180 | 3001573 | SCOP2B (2022-06-29) |
| K [auth L] | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8093612 | 3001523 | SCOP2B (2022-06-29) |
| EA [auth l] | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8093612 | 3001523 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| J [auth K] | e5gtiK1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| DA [auth k] | e5gtik1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| I [auth J] | e5gtiJ1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| CA [auth j] | e5gtij1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| H [auth I] | e5gtiI1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| BA [auth i] | e5gtii1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| G [auth H] | e5gtiH1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| AA [auth h] | e5gtih1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| Z [auth f] | e5gtif1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| F | e5gtiF1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| Y [auth e] | e5gtie1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| E | e5gtiE1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| X [auth d] | e5gtid1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| D | e5gtiD1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| W [auth c] | e5gtic1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| C | e5gtiC1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| T [auth R] | e5gtiR1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| V [auth b] | e5gtib1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| B | e5gtiB1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| S [auth Z] | e5gtiZ1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| MA [auth z] | e5gtiz1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| R [auth Y] | e5gtiY1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| LA [auth y] | e5gtiy1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| Q [auth X] | e5gtiX1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| KA [auth x] | e5gtix1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| P [auth V] | e5gtiV1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| JA [auth v] | e5gtiv1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| O [auth U] | e5gtiU1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| IA [auth u] | e5gtiu1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| N [auth T] | e5gtiT1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| HA [auth t] | e5gtit1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| M [auth O] | e5gtiO1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| GA [auth o] | e5gtio1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| L [auth M] | e5gtiM1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| FA [auth m] | e5gtim1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| K [auth L] | e5gtiL1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| EA [auth l] | e5gtil1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| U [auth a] | e5gtia1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) | |
| A | e5gtiA1 | A: Cytochrome P450 | X: Cytochrome P450 | H: Cytochrome P450 | T: HRDC | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Photosystems | Photosystem II by femtosecond X-ray pulses, preflash dark state |
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| BA [auth i], H [auth I] | FME | Parent Component: MET :  AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
| HA [auth t], N [auth T] | FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
| FA [auth m], L [auth M] | FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |














