5HZK
Crystal structure of photoinhibitable Intersectin1 containing wildtype LOV2 domain in complex with Cdc42
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057416 | 3002022 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Ras-like P-loop GTPases | 8057416 | 3002022 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | DBL homology domain (DH-domain) | 8040298 | 3000793 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | DBL homology domain (DH-domain) | 8040298 | 3000793 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | PH domain-like | 8040303 | 3000134 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Ras | e5hzkA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
| C | Ras | e5hzkC1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Ras | ECOD (1.6) |
| B | PH_13 | e5hzkB3 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH_13 | ECOD (1.6) |
| B | RhoGEF | e5hzkB2 | A: alpha bundles | X: DH domain-like | H: DBL homology domain (DH-domain) (From Topology) | T: DBL homology domain (DH-domain) | F: RhoGEF | ECOD (1.6) |
| B | PAS | e5hzkB1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS | ECOD (1.6) |
| D | PH_13 | e5hzkD2 | A: beta barrels | X: PH domain-like | H: PH domain-like (From Topology) | T: PH domain-like | F: PH_13 | ECOD (1.6) |
| D | RhoGEF | e5hzkD3 | A: alpha bundles | X: DH domain-like | H: DBL homology domain (DH-domain) (From Topology) | T: DBL homology domain (DH-domain) | F: RhoGEF | ECOD (1.6) |
| D | PAS | e5hzkD1 | A: a+b three layers | X: Profilin-like | H: sensor domains (From Topology) | T: sensor domains | F: PAS | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
| C | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain | |
| PF13426 | PAS domain (PAS_9) | PAS domain | This domain is found in many signalling proteins in which it functions as a sensor domain. It recognises FMN, Zn(II), FAD and riboflavin (MAtilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). | Domain | |
| PF16652 | Pleckstrin homology domain (PH_13) | Pleckstrin homology domain | - | Domain | |
| PF00621 | RhoGEF domain (RhoGEF) | RhoGEF domain | Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that Pfam:PF00169 domains invariably occur C-terminal to RhoGEF/DH domains. | Domain |
