5IJV | pdb_00005ijv

Crystal structure of bovine Fab E03

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
SAbDab Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
G [auth E]	d5ijve1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
E [auth C]	d5ijvc1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
C [auth A]	d5ijva1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
A [auth L]	d5ijvl1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	automated matches	automated matches	(Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth D]	PPP2R1A-like_HEAT, VPS15-like_hel	e5ijvD1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
H [auth F]	PPP2R1A-like_HEAT, VPS15-like_hel	e5ijvF1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
D [auth B]	PPP2R1A-like_HEAT, VPS15-like_hel	e5ijvB1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
B [auth H]	PPP2R1A-like_HEAT, VPS15-like_hel	e5ijvH1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
G [auth E]	PPP2R1A-like_HEAT, VPS15-like_hel	e5ijvE1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
E [auth C]	PPP2R1A-like_HEAT, VPS15-like_hel	e5ijvC1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
C [auth A]	PPP2R1A-like_HEAT, VPS15-like_hel	e5ijvA1	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)
A [auth L]	PPP2R1A-like_HEAT, VPS15-like_hel	e5ijvL2	A: a/b three-layered sandwiches	X: cradle loop barrel	H: RIFT-related	T: Alanine racemase-C	F: PPP2R1A-like_HEAT, VPS15-like_hel	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth D]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
H [auth F]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
D [auth B]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B [auth H]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
G [auth E]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
E [auth C]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C [auth A]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A [auth L]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
B [auth H], D [auth B], F [auth D], H [auth F]	E03 Fab	V-DELTA	Bos taurus (bovine)	-	-	IG	(V-DELTA-CH2)	IMGT (202611-0)
A [auth L], C [auth A], E [auth C], G [auth E]	E03 Fab	1C-LIKE	Bos taurus (bovine)	IGLV1-9801, TRAJ2201, TRAJ47*01	V-DOMAIN V-DELTA	IG	(V-DELTA-CH2)	IMGT (202611-0)

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
B [auth H], D [auth B], F [auth D], H [auth F]	Heavy Chain	IGHV1	-	-	SAbDab (2026-03-27)
A [auth L], C [auth A], E [auth C], G [auth E]	Light Chain	IGLV1	Lambda	-	SAbDab (2026-03-27)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth H], D [auth B], F [auth D], H [auth F]	bovine Fab E03 heavy chain	-	-	-
A [auth L], C [auth A], E [auth C], G [auth E]	bovine Fab E03 light chain	-	-	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex immunoglobulin complex extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth L], C [auth A], E [auth C], G [auth E]	IPR003597	Immunoglobulin C1-set	Domain
A [auth L], C [auth A], E [auth C], G [auth E]	IPR050150	Immunoglobulin Variable Light Chain	Family
A [auth L], C [auth A], E [auth C], G [auth E]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A [auth L], C [auth A], E [auth C], G [auth E]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A [auth L], C [auth A], E [auth C], G [auth E]	IPR013106	Immunoglobulin V-set domain	Domain
A [auth L], C [auth A], E [auth C], G [auth E]	IPR003599	Immunoglobulin domain subtype	Domain
A [auth L], C [auth A], E [auth C], G [auth E]	IPR007110	Immunoglobulin-like domain	Domain
A [auth L], C [auth A], E [auth C], G [auth E]	IPR003006	Immunoglobulin/major histocompatibility complex, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.