5ISO | pdb_00005iso

STRUCTURE OF FULL LENGTH HUMAN AMPK (NON-PHOSPHORYLATED AT T-LOOP) IN COMPLEX WITH A SMALL MOLECULE ACTIVATOR, A BENZIMIDAZOLE DERIVATIVE (991)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyProtein kinase-like (PK-like) 8062360 3000066 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyProtein kinase-like (PK-like) 8062360 3000066 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth E]C1-sete5isoE1 A: a/b three-layered sandwichesX: Spectrin repeat-likeH: TIM barrelsT: TIM barrelsF: C1-setECOD (v294.1)
FC1-sete5isoF1 A: a/b three-layered sandwichesX: Spectrin repeat-likeH: TIM barrelsT: TIM barrelsF: C1-setECOD (v294.1)
BC1-sete5isoB1 A: a/b three-layered sandwichesX: Spectrin repeat-likeH: TIM barrelsT: TIM barrelsF: C1-setECOD (v294.1)
E [auth D]C1-sete5isoD1 A: a/b three-layered sandwichesX: Spectrin repeat-likeH: TIM barrelsT: TIM barrelsF: C1-setECOD (v294.1)
AAARP2CNe5isoA1 A: a/b three-layered sandwichesX: Spectrin repeat-likeH: Spectrin repeatT: Spectrin repeatF: AARP2CNECOD (v294.1)
D [auth C]C1-sete5isoC1 A: a/b three-layered sandwichesX: Spectrin repeat-likeH: TIM barrelsT: TIM barrelsF: C1-setECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (utative)
A1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (utative)
A1.10.8.10 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (utative)
D [auth C]3.30.200.20 Alpha Beta 2-Layer Sandwich Phosphorylase Kinase domain 1CATH (utative)
D [auth C]1.10.510.10 Mainly Alpha Orthogonal Bundle Transferase(Phosphotransferase) domain 1CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth E],
F
PF00571CBS domain (CBS)CBS domainCBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands ...CBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet [5]. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet [4]. CBS domain pairs from AMPK bind AMP or ATP [5]. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP [5].
Domain
B,
E [auth D]
PF16561Glycogen recognition site of AMP-activated protein kinase (AMPK1_CBM)Glycogen recognition site of AMP-activated protein kinase- Family
A,
D [auth C]
PF21147AMP-activated protein kinase, alpha subunit, autoinhibitory domain (AMPK_alpha_AID)AMP-activated protein kinase, alpha subunit, autoinhibitory domainThis domain is found in the catalytic subunit (alpha) of the enzymatic complex AMP-activated protein kinase (AMPK). This protein is organised into an N-terminal kinase domain (KD, Pfam:PF00069) and a regulatory C-terminus, which contains an autoinhib ...This domain is found in the catalytic subunit (alpha) of the enzymatic complex AMP-activated protein kinase (AMPK). This protein is organised into an N-terminal kinase domain (KD, Pfam:PF00069) and a regulatory C-terminus, which contains an autoinhibitory domain (AID, this entry). This domain can form a compact domain that stabilizes the KD and binds to CBS-2 of the gamma-subunit [1-7].
Domain
A,
D [auth C]
PF00069Protein kinase domain (Pkinase)Protein kinase domainDomain
A,
D [auth C]
PF16579Adenylate sensor of SNF1-like protein kinase (AdenylateSensor)Adenylate sensor of SNF1-like protein kinaseAdenylateSensor is a family found at the C-terminus of SNF1-like protein kinases snf other protein-kinases [1]. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth E],
F
5'-AMP-activated protein kinase subunit gamma-1
B,
E [auth D]
5'-AMP-activated protein kinase subunit beta-1
A,
D [auth C]
5'-AMP-activated protein kinase catalytic subunit alpha-2

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
B,
E [auth D]
SEP Parent Component: SER

RESIDAA0037

PSI-MOD :  O-phospho-L-serine MOD:00046