5J26
Crystal structure of a 53BP1 Tudor domain in complex with a ubiquitin variant
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | d5j26b_ | Alpha and beta proteins (a+b) | beta-Grasp (ubiquitin-like) | Ubiquitin-like | Ubiquitin-related | automated matches | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth A] | d5j26a2 | All beta proteins | SH3-like barrel | Tudor/PWWP/MBT | Tudor domain | p53-binding protein 1, 53BP1, C-terminal domain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B [auth A] | d5j26a1 | All beta proteins | SH3-like barrel | Tudor/PWWP/MBT | Tudor domain | p53-binding protein 1, 53BP1, N-terminal domain | Human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth B] | SCOP2B Superfamily | Ubiquitin-like | 8066187 | 3000157 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Tudor/PWWP/MBT domain-like | 8041642 | 3000404 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | Tudor/PWWP/MBT domain-like | 8041640 | 3000404 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth B] | ubiquitin_1 | e5j26B1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ubiquitin_1 | ECOD (1.6) |
B [auth A] | 53-BP1_Tudor_C | e5j26A2 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: 53-BP1_Tudor_C | ECOD (1.6) |
B [auth A] | 53-BP1_Tudor_N | e5j26A1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: 53-BP1_Tudor_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B [auth A] | 2.30.30.140 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) | |
B [auth A] | 2.30.30.30 | Mainly Beta | Roll | SH3 type barrels. | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth B] | PF00240 | Ubiquitin family (ubiquitin) | Ubiquitin family | This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue) (see Swiss:Q02724), Nedd8 (see Swiss:P29595), Elongin B (see Swiss:Q15370), Rub1 (see Swiss:Q9SHE7), and Parkin (see Swiss:O60260). A number of them are thought to carry ... | Domain |
B [auth A] | PF09038 | Tumour suppressor p53-binding protein-1 Tudor (53-BP1_Tudor) | Tumour suppressor p53-binding protein-1 Tudor | Members of this family consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. This domain is essential for the recruitmen ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth B] | IPR019954 | Ubiquitin conserved site | Conserved Site |
A [auth B] | IPR038587 | Large ribosomal subunit protein eL40 superfamily | Homologous Superfamily |
A [auth B] | IPR050158 | Ubiquitin and ubiquitin-like | Family |
A [auth B] | IPR000626 | Ubiquitin-like domain | Domain |
A [auth B] | IPR019956 | Ubiquitin domain | Domain |
A [auth B] | IPR001975 | Large ribosomal subunit protein eL40 domain | Domain |
A [auth B] | IPR029071 | Ubiquitin-like domain superfamily | Homologous Superfamily |
B [auth A] | IPR047252 | TP53-binding protein 1-like | Family |
B [auth A] | IPR014722 | Large ribosomal subunit protein uL2, domain 2 | Homologous Superfamily |
B [auth A] | IPR015125 | Tumour suppressor p53-binding protein-1, Tudor domain | Domain |
B [auth A] | IPR001357 | BRCT domain | Domain |
B [auth A] | IPR036420 | BRCT domain superfamily | Homologous Superfamily |
B [auth A] | IPR047249 | TP53-binding protein 1-like, first BRCT domain | Domain |
B [auth A] | IPR047250 | TP53-binding protein 1-like, second BRCT domain | Domain |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target | Associated Disease |
---|---|---|
A [auth B] | P62987 | :|
B [auth A] | Q12888 | :