Structure of membrane protein
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d5jsib_ | Membrane and cell surface proteins and peptides | Class A G protein-coupled receptor (GPCR)-like | Class A G protein-coupled receptor (GPCR)-like | automated matches | automated matches | (Candidatus Actinomarina minuta ) [TaxId: 1389454 ], | SCOPe (2.08) |
| A | d5jsia_ | Membrane and cell surface proteins and peptides | Class A G protein-coupled receptor (GPCR)-like | Class A G protein-coupled receptor (GPCR)-like | automated matches | automated matches | (Candidatus Actinomarina minuta ) [TaxId: 1389454 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | G protein-coupled receptor-like | 8071328 | 3000473 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Bacteriorhodopsin-like | 8071327 | 4001859 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | G protein-coupled receptor-like | 8071328 | 3000473 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | PrpF | e5jsiB1 | A: a/b three-layered sandwiches | X: Beta domain of coronavirus spike glycoprotein | H: Diaminopimelate epimerase-like | T: Diaminopimelate epimerase-like | F: PrpF | ECOD (v294.1) |
| A | PrpF | e5jsiA1 | A: a/b three-layered sandwiches | X: Beta domain of coronavirus spike glycoprotein | H: Diaminopimelate epimerase-like | T: Diaminopimelate epimerase-like | F: PrpF | ECOD (v294.1) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Bacteriorhodopsin | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR001425 | Archaeal/bacterial/fungal rhodopsins | Family |
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Rhodopsin-like receptors and pumps | Microbial and algal rhodopsins |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
