5JV3 | pdb_00005jv3

The neck-linker and alpha 7 helix of Homo sapiens Eg5 fused to EB1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5jv3a_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d5jv3b_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d5jv3c_	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d5jv3d1	All alpha proteins	EB1 dimerisation domain-like	EB1 dimerisation domain-like	EB1 dimerisation domain-like	Microtubule-associated protein EB1, C-terminal dimerization domain	Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d5jv3d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Human (Homo sapiens ) [TaxId: 9606 ], Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5jv3A1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: fn3	F:	ECOD (20:10:01)
B		e5jv3B1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: fn3	F:	ECOD (20:10:01)
C		e5jv3C1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: fn3	F:	ECOD (20:10:01)
D		e5jv3D1	A: cradle loop barrel	X: RIFT-related	H: acid protease	T: fn3	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
D	1.20.5.1430	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF03271	EB1-like C-terminal motif (EB1)	EB1-like C-terminal motif	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Chimera protein of Kinesin-like protein KIF11 and Microtubule-associated protein RP/EB family member 1	microtubule motor activity polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding microtubule motor activity polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cytoskeletal protein binding microtubule binding protein binding tubulin binding kinase binding enzyme binding protein kinase binding plus-end-directed microtubule motor activity RNA binding nucleic acid binding protein serine/threonine kinase binding cell adhesion molecule binding cadherin binding microtubule plus-end binding identical protein binding	cellular process cell cycle mitotic cell cycle cell division microtubule-based movement microtubule-based process spindle elongation microtubule cytoskeleton organization cellular component organization organelle organization nuclear chromosome segregation cellular component organization or biogenesis cytoskeleton organization chromosome segregation cellular process cell cycle mitotic cell cycle cell division microtubule-based movement microtubule-based process spindle elongation microtubule cytoskeleton organization cellular component organization organelle organization nuclear chromosome segregation cellular component organization or biogenesis cytoskeleton organization chromosome segregation spindle organization cell cycle process membraneless organelle assembly cellular component biogenesis cellular component assembly mitotic sister chromatid segregation microtubule cytoskeleton organization involved in mitosis mitotic nuclear division organelle assembly organelle fission chromosome organization sister chromatid segregation spindle assembly mitotic spindle organization mitotic spindle assembly nuclear division mitotic cell cycle process regulation of cellular process centrosome separation mitotic centrosome separation centrosome cycle regulation of cell cycle regulation of biological process microtubule organizing center organization regulation of cell cycle process biological regulation regulation of mitotic centrosome separation microtubule bundle formation protein localization to microtubule cytoskeleton localization protein localization to cytoskeleton protein localization to organelle macromolecule localization protein localization to microtubule organizing center intracellular protein localization protein localization to centrosome regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization regulation of cellular component organization negative regulation of biological process regulation of protein-containing complex assembly microtubule polymerization or depolymerization negative regulation of cellular process protein-containing complex assembly negative regulation of protein polymerization negative regulation of supramolecular fiber organization protein polymerization negative regulation of cellular component organization negative regulation of microtubule polymerization or depolymerization protein-containing complex organization negative regulation of cytoskeleton organization regulation of microtubule-based process negative regulation of microtubule polymerization microtubule polymerization regulation of cellular component biogenesis regulation of organelle organization negative regulation of protein-containing complex assembly negative regulation of organelle organization regulation of protein polymerization regulation of microtubule polymerization regulation of supramolecular fiber organization supramolecular fiber organization regulation of microtubule cytoskeleton organization mitotic metaphase chromosome alignment metaphase chromosome alignment chromosome localization organelle localization attachment of spindle microtubules to kinetochore attachment of mitotic spindle microtubules to kinetochore cell migration cell motility plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cilium assembly non-motile cilium assembly cilium organization cell projection assembly protein localization to astral microtubule protein localization to microtubule protein localization to cytoplasmic microtubule protein localization to spindle microtubule protein localization to mitotic spindle establishment of organelle localization cellular localization spindle localization establishment or maintenance of cell polarity establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation establishment of localization in cell establishment of localization establishment of cell polarity establishment of mitotic spindle orientation positive regulation of organelle organization positive regulation of cellular component organization positive regulation of biological process positive regulation of protein-containing complex assembly positive regulation of protein polymerization positive regulation of cellular process positive regulation of microtubule polymerization or depolymerization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization positive regulation of supramolecular fiber organization positive regulation of microtubule polymerization	intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton membrane sperm end piece membrane-bounded organelle cell projection intracellular organelle cellular anatomical structure intracellular anatomical structure cytoskeleton spindle organelle membraneless organelle intracellular membraneless organelle spindle pole microtubule cytoskeleton membrane sperm end piece membrane-bounded organelle cell projection cilium 9+2 motile cilium sperm flagellum motile cilium plasma membrane bounded cell projection cytoplasm cytosol protein-containing complex microtubule associated complex kinesin complex sperm principal piece sperm midpiece mitotic spindle ciliary basal body microtubule organizing center polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex nucleus intracellular membrane-bounded organelle anchoring junction cell junction focal adhesion cell-substrate junction spindle midzone centrosome aster spindle microtubule cytoplasmic microtubule mitotic spindle astral microtubule end microtubule end mitotic spindle astral microtubule astral microtubule microtubule plus-end cell periphery plasma membrane plasma membrane region cell projection membrane Golgi apparatus endomembrane system cell cortex cortical cytoskeleton cortical microtubule cytoskeleton mitotic spindle pole mitotic spindle microtubule

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A, B, C, D	IPR001752	Kinesin motor domain	Domain
A, B, C, D	IPR047241	Kinesin-like protein KIF11-like, kinesin motor domain	Domain
A, B, C, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D	IPR047149	Kinesin-like protein KIF11-like	Family
A, B, C, D	IPR025901	Kinesin-associated microtubule-binding domain	Domain
A, B, C, D	IPR019821	Kinesin motor domain, conserved site	Conserved Site
A, B, C, D	IPR001715	Calponin homology domain	Domain
A, B, C, D	IPR004953	EB1, C-terminal	Domain
A, B, C, D	IPR027328	Microtubule-associated protein RP/EB	Family
A, B, C, D	IPR036133	EB1, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D	IPR036872	CH domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q15691	microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability Chromosomal Instability aneuploidy psoriasis lymphatic system disease malignant glioma medulloblastoma non-alcoholic fatty liver disease adrenal cortex carcinoma osteosarcoma atopic eczema pancreatic intraductal papillary-mucinous neoplasm breast carcinoma endometriosis IgA glomerulonephritis microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability Chromosomal Instability aneuploidy psoriasis lymphatic system disease malignant glioma medulloblastoma non-alcoholic fatty liver disease adrenal cortex carcinoma osteosarcoma atopic eczema pancreatic intraductal papillary-mucinous neoplasm breast carcinoma endometriosis IgA glomerulonephritis Sjogren syndrome interstitial cystitis lung adenocarcinoma malignant colon neoplasm malignant mesothelioma microcephaly nasopharyngeal carcinoma non-small cell lung carcinoma amyotrophic lateral sclerosis ovarian cancer atypical teratoid rhabdoid tumor pilocytic astrocytoma glioblastoma primitive neuroectodermal tumor inflammatory bowel disease ulcerative colitis invasive ductal breast carcinoma lung cancer malignant ependymoma malignant pancreatic neoplasm oligodendroglioma pancreatic intraductal papillary-mucinous carcinoma breast cancer pituitary cancer ductal breast carcinoma in situ hepatocellular carcinoma intellectual disability large cell medulloblastoma Weight Gain primitive neuroectodermal tumor astrocytic tumor coronary artery disease inflammatory bowel disease lymphoplasmacytic lymphoma medulloblastoma oligodendroglioma plasma cell myeloma atypical teratoid rhabdoid tumor dermatomyositis juvenile dermatomyositis malignant ependymoma myocardial ischemia osteosarcoma polycystic ovary syndrome breast carcinoma glioblastoma large cell medulloblastoma malignant glioma nicotine dependence ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.