5JYO | pdb_00005jyo

Allosteric inhibition of Kidney Isoform of Glutaminase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d5jyoh1	Multi-domain proteins (alpha and beta)	beta-lactamase/transpeptidase-like	beta-lactamase/transpeptidase-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H	d5jyoh2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d5jyog1	Multi-domain proteins (alpha and beta)	beta-lactamase/transpeptidase-like	beta-lactamase/transpeptidase-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d5jyog2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d5jyof1	Multi-domain proteins (alpha and beta)	beta-lactamase/transpeptidase-like	beta-lactamase/transpeptidase-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d5jyof2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d5jyoe1	Multi-domain proteins (alpha and beta)	beta-lactamase/transpeptidase-like	beta-lactamase/transpeptidase-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d5jyoe2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D [auth C]	d5jyoc1	Multi-domain proteins (alpha and beta)	beta-lactamase/transpeptidase-like	beta-lactamase/transpeptidase-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D [auth C]	d5jyoc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth B]	d5jyob1	Multi-domain proteins (alpha and beta)	beta-lactamase/transpeptidase-like	beta-lactamase/transpeptidase-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C [auth B]	d5jyob2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B [auth A]	d5jyoa1	Multi-domain proteins (alpha and beta)	beta-lactamase/transpeptidase-like	beta-lactamase/transpeptidase-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B [auth A]	d5jyoa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A [auth D]	d5jyod1	Multi-domain proteins (alpha and beta)	beta-lactamase/transpeptidase-like	beta-lactamase/transpeptidase-like	automated matches	automated matches	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A [auth D]	d5jyod2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	beta-lactamase/transpeptidase-like	8064348	3001604	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	beta-lactamase/transpeptidase-like	8064348	3001604	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	beta-lactamase/transpeptidase-like	8064348	3001604	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	beta-lactamase/transpeptidase-like	8064348	3001604	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	beta-lactamase/transpeptidase-like	8064348	3001604	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	beta-lactamase/transpeptidase-like	8064348	3001604	SCOP2B (2022-06-29)
B [auth A]	SCOP2B Superfamily	beta-lactamase/transpeptidase-like	8064348	3001604	SCOP2B (2022-06-29)
A [auth D]	SCOP2B Superfamily	beta-lactamase/transpeptidase-like	8064348	3001604	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	fn3	e5jyoH1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F: fn3	ECOD (v294.1)
G	fn3	e5jyoG1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F: fn3	ECOD (v294.1)
F	fn3	e5jyoF1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F: fn3	ECOD (v294.1)
E	fn3	e5jyoE1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F: fn3	ECOD (v294.1)
D [auth C]	fn3	e5jyoC1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F: fn3	ECOD (v294.1)
C [auth B]	fn3	e5jyoB1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F: fn3	ECOD (v294.1)
B [auth A]	fn3	e5jyoA1	A: a/b three-layered sandwiches	X: Rossmann-like	H: RIFT-related	T: acid protease	F: fn3	ECOD (v294.1)
A [auth D]	Glyco_hydro_18	e5jyoD1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Glyco_hydro_18	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (4.3.0)
G	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (4.3.0)
F	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (4.3.0)
E	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (4.3.0)
D [auth C]	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (4.3.0)
C [auth B]	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (4.3.0)
B [auth A]	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (4.3.0)
A [auth D]	3.40.710.10	Alpha Beta	3-Layer(aba) Sandwich	Beta-lactamase	DD-peptidase/beta-lactamase superfamily	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth D], B [auth A], C [auth B], D [auth C], E, A [auth D], B [auth A], C [auth B], D [auth C], E, F, G, H	PF04960	Glutaminase (Glutaminase)	Glutaminase	This family of enzymes deaminates glutamine to glutamate EC:3.5.1.2.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D], B [auth A], C [auth B], D [auth C], E, A [auth D], B [auth A], C [auth B], D [auth C], E, F, G, H	Glutaminase kidney isoform, mitochondrial	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides glutaminase activity hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	intracellular amino acid homeostasis cellular homeostasis intracellular glutamate homeostasis chemical homeostasis homeostatic process intracellular chemical homeostasis behavior suckling behavior multicellular organismal process feeding behavior trans-synaptic signaling synaptic signaling regulation of biological process signaling intracellular amino acid homeostasis cellular homeostasis intracellular glutamate homeostasis chemical homeostasis homeostatic process intracellular chemical homeostasis behavior suckling behavior multicellular organismal process feeding behavior trans-synaptic signaling synaptic signaling regulation of biological process signaling anterograde trans-synaptic signaling biological regulation cell-cell signaling cellular process chemical synaptic transmission cell communication protein-containing complex organization protein homotetramerization cellular component organization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization cellular component organization or biogenesis system process nervous system process regulation of system process respiratory gaseous exchange by respiratory system respiratory system process regulation of respiratory gaseous exchange regulation of multicellular organismal process regulation of respiratory system process regulation of respiratory gaseous exchange by nervous system process glutamine metabolic process catabolic process oxoacid metabolic process L-amino acid catabolic process carboxylic acid metabolic process L-glutamine catabolic process amino acid metabolic process primary metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process alpha-amino acid catabolic process proteinogenic amino acid catabolic process carboxylic acid catabolic process metabolic process small molecule metabolic process small molecule catabolic process amino acid catabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle synapse cell junction cytosol membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle synapse cell junction cytosol membrane-enclosed lumen mitochondrial matrix intracellular organelle lumen organelle lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D], B [auth A], C [auth B], D [auth C], E, A [auth D], B [auth A], C [auth B], D [auth C], E, F, G, H	IPR002110	Ankyrin repeat	Repeat
A [auth D], B [auth A], C [auth B], D [auth C], E, A [auth D], B [auth A], C [auth B], D [auth C], E, F, G, H	IPR012338	Beta-lactamase/transpeptidase-like	Homologous Superfamily
A [auth D], B [auth A], C [auth B], D [auth C], E, A [auth D], B [auth A], C [auth B], D [auth C], E, F, G, H	IPR036770	Ankyrin repeat-containing domain superfamily	Homologous Superfamily
A [auth D], B [auth A], C [auth B], D [auth C], E, A [auth D], B [auth A], C [auth B], D [auth C], E, F, G, H	IPR015868	Glutaminase	Family
A [auth D], B [auth A], C [auth B], D [auth C], E, A [auth D], B [auth A], C [auth B], D [auth C], E, F, G, H	IPR041541	Glutaminase, EF-hand domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth D], B [auth A], C [auth B], D [auth C], E, A [auth D], B [auth A], C [auth B], D [auth C], E, F, G, H	Pharos: O94925	Liver Cirrhosis, Experimental interstitial cystitis malignant ependymoma medulloblastoma non-small cell lung carcinoma osteoarthritis susceptibility 1 adenoma ovarian cancer atopic eczema pituitary cancer celiac disease psoriasis cutaneous lupus erythematosus subependymal giant cell astrocytoma epilepsy Liver Cirrhosis, Experimental interstitial cystitis malignant ependymoma medulloblastoma non-small cell lung carcinoma osteoarthritis susceptibility 1 adenoma ovarian cancer atopic eczema pituitary cancer celiac disease psoriasis cutaneous lupus erythematosus subependymal giant cell astrocytoma epilepsy tuberculosis gastric carcinoma juvenile dermatomyositis lung cancer malignant glioma nasopharyngeal carcinoma oligodendroglioma Alzheimer disease Pick disease atypical teratoid rhabdoid tumor primary biliary cholangitis congenital disorder of glycosylation schizophrenia dermatomyositis systemic lupus erythematosus esophageal adenocarcinoma ulcerative colitis glioblastoma large cell medulloblastoma lung carcinoma malignant mesothelioma nephrosclerosis osteoarthritis osteosarcoma astrocytic tumor pilocytic astrocytoma cataract primitive neuroectodermal tumor Crohn disease Emery-Dreifuss muscular dystrophy systemic sclerosis gastric cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.