5LZS

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyTranslational proteins 8078357 3000811 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRibosomal protein L4 8052829 3001146 SCOP2B (2022-06-29)
CSCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052828 3002143 SCOP2B (2022-06-29)
BA [auth c]SCOP2B SuperfamilyL30e-like 8094953 3001739 SCOP2B (2022-06-29)
DA [auth e]SCOP2 FamilyRibosomal protein L32e 8102089 4003517 SCOP2 (2022-06-29)
DA [auth e]SCOP2 SuperfamilyRibosomal protein L32e 8102090 3000982 SCOP2 (2022-06-29)
DA [auth e]SCOP2B SuperfamilyRibosomal protein L32e 8102088 3000982 SCOP2B (2022-06-29)
EA [auth f]SCOP2B SuperfamilyTranslational proteins 8093714 3000811 SCOP2B (2022-06-29)
GB [auth II]SCOP2B Superfamily50S Ribosomal protein L14-like 8053075 3000433 SCOP2B (2022-06-29)
JSCOP2 FamilyRibosomal protein L5 8073893 4001498 SCOP2 (2022-06-29)
JSCOP2 SuperfamilyRL5-like 8073894 3001709 SCOP2 (2022-06-29)
M [auth N]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082477 3000210 SCOP2B (2022-06-29)
U [auth V]SCOP2B Superfamily50S Ribosomal protein L14-like 8072048 3000433 SCOP2B (2022-06-29)
W [auth X]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095966 3000210 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076754 3000334 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053047 3000334 SCOP2B (2022-06-29)
Z [auth a]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8097818 3001045 SCOP2B (2022-06-29)
FA [auth g]SCOP2B SuperfamilyRibosomal protein L34e-like 8103328 3002203 SCOP2B (2022-06-29)
HA [auth i]SCOP2B SuperfamilyRibosomal protein L36e 8053119 3002161 SCOP2B (2022-06-29)
KA [auth l]SCOP2B SuperfamilyRibosomal protein L39e 8095597 3001756 SCOP2B (2022-06-29)
OA [auth p]SCOP2B SuperfamilyZn-binding ribosomal proteins 8101435 3001320 SCOP2B (2022-06-29)
ZA [auth BB]SCOP2B SuperfamilyRibosomal S3Ae-like 8053216 3002166 SCOP2B (2022-06-29)
DB [auth FF]SCOP2B SuperfamilyRibosomal protein S7 8066001 3000799 SCOP2B (2022-06-29)
IB [auth KK]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055720 3000034 SCOP2B (2022-06-29)
JB [auth LL]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052708 3002138 SCOP2B (2022-06-29)
JB [auth LL]SCOP2B SuperfamilyNucleic acid-binding proteins 8052707 3000135 SCOP2B (2022-06-29)
KB [auth MM]SCOP2 FamilyL30e/L7ae ribosomal proteins 8063979 4001513 SCOP2 (2022-06-29)
KB [auth MM]SCOP2 SuperfamilyL30e-like 8063980 3001739 SCOP2 (2022-06-29)
LB [auth NN]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052971 3001284 SCOP2B (2022-06-29)
LB [auth NN]SCOP2B SuperfamilyHomeodomain-like 8052970 3000001 SCOP2B (2022-06-29)
MB [auth OO]SCOP2B SuperfamilyTranslational machinery components 8097824 3000571 SCOP2B (2022-06-29)
OB [auth QQ]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082683 3000100 SCOP2B (2022-06-29)
QB [auth SS]SCOP2B SuperfamilyS13-like H2TH domain 8101439 3000053 SCOP2B (2022-06-29)
RB [auth TT]SCOP2B SuperfamilyWinged helix DNA-binding domain 8089322 3000034 SCOP2B (2022-06-29)
SB [auth UU]SCOP2B SuperfamilyRibosomal protein S10 8097814 3001336 SCOP2B (2022-06-29)
UB [auth WW]SCOP2B SuperfamilyRibosomal protein S8 8079081 3000709 SCOP2B (2022-06-29)
XB [auth ZZ]SCOP2B SuperfamilyWinged helix DNA-binding domain 8090991 3000034 SCOP2B (2022-06-29)
AC [auth cc]SCOP2B SuperfamilyNucleic acid-binding proteins 8095265 3000135 SCOP2B (2022-06-29)
BC [auth dd]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052584 3000068 SCOP2B (2022-06-29)
CC [auth ee]SCOP2B SuperfamilyRibosomal protein S30e-like 8053455 3002190 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRibosomal protein L16p/L10e 8097320 3000884 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BRibosomal_L3e5lzsB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
CRibosomal_L4e5lzsC2 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
CRibos_L4_asso_Ce5lzsC1 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: Ribos_L4_asso_CECOD (1.6)
FRibosomal_L30_1e5lzsF1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
L [auth M]Ribosomal_L14ee5lzsM1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L14eECOD (1.6)
Q [auth R]Ribosomal_L19e_Ne5lzsR2 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
Q [auth R]Ribosomal_L19e_Ce5lzsR1 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
R [auth S]Ribosomal_L18Ae5lzsS1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: Ribosomal_L18AECOD (1.6)
T [auth U]Ribosomal_L22ee5lzsU1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: Ribosomal_L22eECOD (1.6)
BA [auth c]Ribosomal_L7Aee5lzsc1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
DA [auth e]Ribosomal_L32ee5lzse1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
EA [auth f]Ribosomal_L35Aee5lzsf1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L35AeECOD (1.6)
LA [auth m]Ribosomal_L40ee5lzsm1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L40eECOD (1.6)
NA [auth o]Ribosomal_L44e5lzso1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
AB [auth CC]Ribosomal_S5_C_1e5lzsCC1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_C_1ECOD (1.6)
AB [auth CC]Ribosomal_S5_3e5lzsCC3 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5_3ECOD (1.6)
AB [auth CC]Ribosomal_S5_2e5lzsCC2 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: Ribosomal_S5_2ECOD (1.6)
GB [auth II]Ribosomal_S8ee5lzsII1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_S8eECOD (1.6)
TB [auth VV]Ribosomal_S21ee5lzsVV1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: Ribosomal_S21eECOD (1.6)
ZB [auth bb]Ribosomal_S27ee5lzsbb1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27eECOD (1.6)
HC [auth jj]GTP_EFTU_D2_1e5lzsjj1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: GTP_EFTU_D2_1ECOD (1.6)
HC [auth jj]GTP_EFTU_D3_1e5lzsjj3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: GTP_EFTU_D3_1ECOD (1.6)
HC [auth jj]MnmE_helical_2nde5lzsjj2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: MnmE_helical_2ndECOD (1.6)
ARibosomal_L2_1e5lzsA2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
ARibosomal_L2_C_2e5lzsA1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
JRibosomal_L5_Ce5lzsJ1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
K [auth L]Ribosomal_L13ee5lzsL1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: Ribosomal_L13eECOD (1.6)
M [auth N]Ribosomal_L15ee5lzsN1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
N [auth O]Ribosomal_L13e5lzsO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
O [auth P]Ribosomal_L22e5lzsP1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
P [auth Q]Ribosomal_L18e5lzsQ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
S [auth T]Ribosomal_L21ee5lzsT1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
U [auth V]Ribosomal_L14e5lzsV1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
V [auth W]Ribosomal_L24ee5lzsW1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
W [auth X]Ribosomal_L23_3e5lzsX1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_3ECOD (1.6)
X [auth Y]Ribosomal_L26e5lzsY1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
Y [auth Z]Ribosomal_L27ee5lzsZ1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L27eECOD (1.6)
Z [auth a]Ribosomal_L18e5lzsa1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
AA [auth b]Ribosomal_L29ee5lzsb1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: Ribosomal_L29eECOD (1.6)
CA [auth d]Ribosomal_L31ee5lzsd1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
FA [auth g]Ribosomal_L34ee5lzsg1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: Ribosomal_L34eECOD (1.6)
GA [auth h]Ribosomal_L29_2e5lzsh1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29_2ECOD (1.6)
HA [auth i]Ribosomal_L36ee5lzsi1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: Ribosomal_L36eECOD (1.6)
IA [auth j]Ribosomal_L37ee5lzsj1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
JA [auth k]Ribosomal_L38ee5lzsk1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: Ribosomal_L38eECOD (1.6)
KA [auth l]Ribosomal_L39e5lzsl1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
MA [auth n]Ribosomal_L41e5lzsn1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: Ribosomal_L41ECOD (1.6)
DRibosomal_L5ee5lzsD1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
OA [auth p]Ribosomal_L37aee5lzsp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
PA [auth r]Ribosomal_L28ee5lzsr1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: Ribosomal_L28eECOD (1.6)
QA [auth s]Ribosomal_L10e5lzss1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
QA [auth s]Ribosomal_P0_L10ee5lzss2 A: a+b two layersX: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)H: Insertion domain in 60S ribosomal protein rpP0 (L10P) (From Topology)T: Insertion domain in 60S ribosomal protein rpP0 (L10P)F: Ribosomal_P0_L10eECOD (1.6)
RA [auth t]Ribosomal_L11e5lzst1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
RA [auth t]Ribosomal_L11_Ne5lzst2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
ERibosomal_L6ee5lzsE1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L6eECOD (1.6)
YA [auth AA]Ribosomal_S2_2e5lzsAA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2_2ECOD (1.6)
ZA [auth BB]Ribosomal_S3Ae_Ne5lzsBB2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: Ribosomal_S3Ae_NECOD (1.6)
ZA [auth BB]Ribosomal_S3Ae_Ce5lzsBB1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: Ribosomal_S3Ae_CECOD (1.6)
BB [auth DD]Ribosomal_S3_Ce5lzsDD2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
BB [auth DD]KH_2_3e5lzsDD1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_3ECOD (1.6)
CB [auth EE]Ribosomal_S4ee5lzsEE2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S4eECOD (1.6)
CB [auth EE]40S_S4_Ce5lzsEE1 A: beta barrelsX: SH3H: SH3T: SH3F: 40S_S4_CECOD (1.6)
CB [auth EE]RS4NTe5lzsEE3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: RS4NTECOD (1.6)
DB [auth FF]Ribosomal_S7_1e5lzsFF1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
EB [auth GG]Ribosomal_S6ee5lzsGG1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_S6eECOD (1.6)
FB [auth HH]Ribosomal_S7e_Ne5lzsHH2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_NECOD (1.6)
FB [auth HH]Ribosomal_S7e_C_1e5lzsHH1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: Ribosomal_S7e_C_1ECOD (1.6)
HB [auth JJ]S4e5lzsJJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
IB [auth KK]S10_plectine5lzsKK1 A: alpha arraysX: HTHH: HTHT: wingedF: S10_plectinECOD (1.6)
JB [auth LL]Ribosomal_S17_1e5lzsLL1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
KB [auth MM]Ribosomal_L7Aee5lzsMM1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7AeECOD (1.6)
LB [auth NN]Ribosomal_S13_Ne5lzsNN1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: Ribosomal_S13_NECOD (1.6)
LB [auth NN]Ribosomal_S15_2e5lzsNN2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_2ECOD (1.6)
MB [auth OO]Ribosomal_S11e5lzsOO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
NB [auth PP]Ribosomal_S19e5lzsPP1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
OB [auth QQ]Ribosomal_S9e5lzsQQ1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
PB [auth RR]Ribosomal_S17ee5lzsRR1 A: alpha arraysX: HTHH: HTHT: FF domainF: Ribosomal_S17eECOD (1.6)
QB [auth SS]Ribosomal_S13e5lzsSS1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13ECOD (1.6)
GRibosomal_L7Ae_1e5lzsG1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
RB [auth TT]Ribosomal_S19ee5lzsTT1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S19eECOD (1.6)
SB [auth UU]Ribosomal_S10_1e5lzsUU1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10_1ECOD (1.6)
UB [auth WW]Ribosomal_S8_N_1e5lzsWW2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_N_1ECOD (1.6)
UB [auth WW]Ribosomal_S8_C_1e5lzsWW1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_C_1ECOD (1.6)
VB [auth XX]Ribosom_S12_S23e5lzsXX1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
WB [auth YY]Ribosomal_S24ee5lzsYY1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_S24eECOD (1.6)
XB [auth ZZ]Ribosomal_S25e5lzsZZ1 A: alpha arraysX: HTHH: HTHT: wingedF: Ribosomal_S25ECOD (1.6)
YB [auth aa]Ribosomal_S26ee5lzsaa1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S26eECOD (1.6)
AC [auth cc]Ribosomal_S28ee5lzscc1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S28eECOD (1.6)
HRibosomal_L6_2e5lzsH2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
HRibosomal_L6e5lzsH1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
BC [auth dd]Ribosomal_S14_2e5lzsdd1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_2ECOD (1.6)
CC [auth ee]Ribosomal_S30e5lzsee1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: Ribosomal_S30ECOD (1.6)
DC [auth ff]Ribosomal_S27e5lzsff1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_S27ECOD (1.6)
EC [auth gg]DUF1899e5lzsgg1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: DUF1899ECOD (1.6)
IRibosomal_L16e5lzsI1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
L [auth M]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
Q [auth R]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
AB [auth CC]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
GB [auth II]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
K [auth L]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
M [auth N]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
N [auth O]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
O [auth P]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
O [auth P]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
S [auth T]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
S [auth T]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
U [auth V]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
V [auth W]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24e- Domain
W [auth X]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
X [auth Y]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
X [auth Y]PF00467KOW motif (KOW)KOW motif- Family
Y [auth Z]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
Y [auth Z]PF00467KOW motif (KOW)KOW motif- Family
PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
ZA [auth BB]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
BB [auth DD]PF07650KH domain (KH_2)KH domain- Domain
BB [auth DD]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
BB [auth DD]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
DB [auth FF]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
DB [auth FF]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
EB [auth GG]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
EB [auth GG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
HB [auth JJ]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
HB [auth JJ]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
HB [auth JJ]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
IB [auth KK]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
JB [auth LL]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
JB [auth LL]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
KB [auth MM]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
LB [auth NN]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
LB [auth NN]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
MB [auth OO]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
NB [auth PP]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
OB [auth QQ]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
QB [auth SS]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
RB [auth TT]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
SB [auth UU]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
UB [auth WW]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
uL3
uL4
uL30
L [auth M]eL14
Q [auth R]eL19---
R [auth S]eL20---
T [auth U]eL22---
BA [auth c]eL30
DA [auth e]eL32
EA [auth f]eL33
LA [auth m]eL40---
NA [auth o]eL42
TA [auth 3]E-site tRNA---
AB [auth CC]uS5---
GB [auth II]40S ribosomal protein S8
TB [auth VV]eS21---
ZB [auth bb]40S ribosomal protein S27
HC [auth jj]Elongation factor 1-alpha 1
uL2
uL5
K [auth L]eL13---
M [auth N]Ribosomal protein L15
N [auth O]uL13---
O [auth P]uL22
P [auth Q]eL18---
S [auth T]eL21
U [auth V]uL14
V [auth W]uL24
W [auth X]uL23
X [auth Y]uL24
Y [auth Z]60S ribosomal protein L27
Z [auth a]uL15
AA [auth b]eL29
CA [auth d]eL31
FA [auth g]eL34
GA [auth h]uL29
HA [auth i]60S ribosomal protein L36
IA [auth j]Ribosomal protein L37
JA [auth k]eL38---
KA [auth l]eL39
MA [auth n]60s ribosomal protein l41---
60S ribosomal protein L5
OA [auth p]eL43
PA [auth r]eL28
QA [auth s]uL10---
RA [auth t]uL11
GC [auth ii],
SA [auth 2]
tRNA---
UA [auth 5]28S ribosomal RNA---
VA [auth 7]5S ribosomal RNA---
WA [auth 8]5.8S ribosomal RNA---
60S ribosomal protein L6
XA [auth 9]18S ribosomal RNA---
YA [auth AA]uS2---
ZA [auth BB]40S ribosomal protein S3a
BB [auth DD]uS4
CB [auth EE]40S ribosomal protein S4---
DB [auth FF]Uncharacterized protein
EB [auth GG]40S ribosomal protein S6
FB [auth HH]uS7
HB [auth JJ]Ribosomal protein S9 (Predicted)
IB [auth KK]eS10 -
JB [auth LL]uS17
KB [auth MM]40S ribosomal protein S12
LB [auth NN]uS15
MB [auth OO]uS11
NB [auth PP]uS19
OB [auth QQ]uS9
PB [auth RR]eS17
QB [auth SS]uS13
eL8
RB [auth TT]eS19
SB [auth UU]uS10
UB [auth WW]uS8
VB [auth XX]uS12---
WB [auth YY]eS24---
XB [auth ZZ]eS25
YB [auth aa]eS26---
AC [auth cc]eS28
uL6
BC [auth dd]uS14
CC [auth ee]eS30
DC [auth ff]eS31
EC [auth gg]RACK1
FC [auth hh]mRNA---
Ribosomal protein L10 (Predicted)

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
IPR000597Large ribosomal subunit protein uL3Family
IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
IPR002136Large ribosomal subunit protein uL4Family
IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
IPR039699Large ribosomal subunit protein uL30Family
IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
L [auth M]IPR039660Large ribosomal subunit protein eL14Family
L [auth M]IPR041985Large ribosomal subunit protein eL14, KOW motifDomain
L [auth M]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
L [auth M]IPR002784Large ribosomal subunit protein eL14 domainDomain
L [auth M]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth c]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
BA [auth c]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
BA [auth c]IPR000231Large ribosomal subunit protein eL30Family
BA [auth c]IPR039109Large ribosomal subunit protein eL30-likeFamily
BA [auth c]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
DA [auth e]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
DA [auth e]IPR001515Large ribosomal subunit protein eL32Family
DA [auth e]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
EA [auth f]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
EA [auth f]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
EA [auth f]IPR001780Large ribosomal subunit protein eL33Family
EA [auth f]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
NA [auth o]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
NA [auth o]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
NA [auth o]IPR000552Large ribosomal subunit protein eL42Family
GB [auth II]IPR001047Small ribosomal subunit protein eS8Family
GB [auth II]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
GB [auth II]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
GB [auth II]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
ZB [auth bb]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
ZB [auth bb]IPR000592Small ribosomal subunit protein eS27Family
ZB [auth bb]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
HC [auth jj]IPR050100Translation factor GTPase superfamily membersFamily
HC [auth jj]IPR000795Translational (tr)-type GTP-binding domainDomain
HC [auth jj]IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalHomologous Superfamily
HC [auth jj]IPR004539Translation elongation factor EF1A, eukaryotic/archaealFamily
HC [auth jj]IPR004161Translation elongation factor EFTu-like, domain 2Domain
HC [auth jj]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
HC [auth jj]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
HC [auth jj]IPR031157Tr-type G domain, conserved siteConserved Site
IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
IPR002171Large ribosomal subunit protein uL2Family
IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
IPR002132Large ribosomal subunit protein uL5Family
M [auth N]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
M [auth N]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
M [auth N]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
M [auth N]IPR000439Large ribosomal subunit protein eL15Family
O [auth P]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
O [auth P]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
O [auth P]IPR001063Large ribosomal subunit protein uL22Family
O [auth P]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
S [auth T]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
S [auth T]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
S [auth T]IPR001147Large ribosomal subunit protein eL21Family
S [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
U [auth V]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
U [auth V]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
U [auth V]IPR000218Large ribosomal subunit protein uL14Family
V [auth W]IPR011017TRASH domainDomain
V [auth W]IPR000988Large ribosomal subunit protein eL24-relatedFamily
V [auth W]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
V [auth W]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
W [auth X]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
W [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
W [auth X]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
W [auth X]IPR019985Large ribosomal subunit protein uL23Family
W [auth X]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
W [auth X]IPR013025Large ribosomal subunit protein uL23-likeFamily
X [auth Y]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
X [auth Y]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth Y]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
X [auth Y]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
X [auth Y]IPR005824KOWDomain
X [auth Y]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
Y [auth Z]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
Y [auth Z]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Y [auth Z]IPR001141Large ribosomal subunit protein eL27Family
Y [auth Z]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
Y [auth Z]IPR005824KOWDomain
Y [auth Z]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
Z [auth a]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
Z [auth a]IPR021131Large ribosomal subunit protein uL15/eL18Domain
Z [auth a]IPR030878Large ribosomal subunit protein uL15Family
Z [auth a]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
Z [auth a]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
AA [auth b]IPR002673Large ribosomal subunit protein eL29Family
CA [auth d]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
CA [auth d]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
CA [auth d]IPR000054Large ribosomal subunit protein eL31Family
FA [auth g]IPR008195Large ribosomal subunit protein eL34Family
FA [auth g]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
GA [auth h]IPR045059Large ribosomal subunit protein uL29, eukaryotesFamily
GA [auth h]IPR001854Large ribosomal subunit protein uL29Family
GA [auth h]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
GA [auth h]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
HA [auth i]IPR000509Large ribosomal subunit protein eL36Family
HA [auth i]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
IA [auth j]IPR001569Large ribosomal subunit protein eL37Family
IA [auth j]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
IA [auth j]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
IA [auth j]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
KA [auth l]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
KA [auth l]IPR000077Large ribosomal subunit protein eL39Family
KA [auth l]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
OA [auth p]IPR002674Large ribosomal subunit protein eL43Family
OA [auth p]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
OA [auth p]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
PA [auth r]IPR029004Ribosomal eL28/Mak16Domain
PA [auth r]IPR002672Large ribosomal subunit protein eL28Family
RA [auth t]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
RA [auth t]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
RA [auth t]IPR000911Ribosomal protein uL11Family
RA [auth t]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
RA [auth t]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
RA [auth t]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
IPR049633Large ribosomal subunit protein eL6, conserved siteConserved Site
IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
IPR000915Large ribosomal subunit protein eL6Family
ZA [auth BB]IPR001593Small ribosomal subunit protein eS1Family
ZA [auth BB]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
ZA [auth BB]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
BB [auth DD]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
BB [auth DD]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
BB [auth DD]IPR004044K Homology domain, type 2Domain
BB [auth DD]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
BB [auth DD]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
BB [auth DD]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
BB [auth DD]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
DB [auth FF]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
DB [auth FF]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
DB [auth FF]IPR000235Small ribosomal subunit protein uS7Family
DB [auth FF]IPR023798Small ribosomal subunit protein uS7 domainDomain
DB [auth FF]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
EB [auth GG]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
EB [auth GG]IPR001377Small ribosomal subunit protein eS6Family
EB [auth GG]IPR014401Small ribosomal subunit protein eS6-likeFamily
FB [auth HH]IPR000554Small ribosomal subunit protein eS7Family
FB [auth HH]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
HB [auth JJ]IPR002942RNA-binding S4 domainDomain
HB [auth JJ]IPR022801Small ribosomal subunit protein uS4Family
HB [auth JJ]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
HB [auth JJ]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
HB [auth JJ]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
HB [auth JJ]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
IB [auth KK]IPR037447Small ribosomal subunit protein eS10Family
IB [auth KK]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IB [auth KK]IPR005326Plectin/eS10, N-terminalDomain
JB [auth LL]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
JB [auth LL]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
JB [auth LL]IPR000266Small ribosomal subunit protein uS17Family
JB [auth LL]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
JB [auth LL]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
KB [auth MM]IPR000530Small ribosomal subunit protein eS12Family
KB [auth MM]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
KB [auth MM]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
KB [auth MM]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
LB [auth NN]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
LB [auth NN]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
LB [auth NN]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
LB [auth NN]IPR000589Small ribosomal subunit protein uS15Family
MB [auth OO]IPR001971Small ribosomal subunit protein uS11Family
MB [auth OO]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
MB [auth OO]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
NB [auth PP]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
NB [auth PP]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
NB [auth PP]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
NB [auth PP]IPR002222Small ribosomal subunit protein uS19Family
OB [auth QQ]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
OB [auth QQ]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
OB [auth QQ]IPR000754Small ribosomal subunit protein uS9Family
OB [auth QQ]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
PB [auth RR]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
PB [auth RR]IPR001210Small ribosomal subunit protein eS17Family
PB [auth RR]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
QB [auth SS]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
QB [auth SS]IPR001892Small ribosomal subunit protein uS13Family
QB [auth SS]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
QB [auth SS]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
IPR018492Ribosomal protein eL8/Nhp2 familyFamily
RB [auth TT]IPR001266Small ribosomal subunit protein eS19Family
RB [auth TT]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
RB [auth TT]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
RB [auth TT]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
SB [auth UU]IPR001848Small ribosomal subunit protein uS10Family
SB [auth UU]IPR027486Small ribosomal subunit protein uS10 domainDomain
SB [auth UU]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
SB [auth UU]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
SB [auth UU]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
UB [auth WW]IPR000630Small ribosomal subunit protein uS8Family
UB [auth WW]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
UB [auth WW]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
XB [auth ZZ]IPR004977Small ribosomal subunit protein eS25Family
XB [auth ZZ]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
AC [auth cc]IPR028626Ribosomal protein eS28 conserved siteConserved Site
AC [auth cc]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
AC [auth cc]IPR000289Small ribosomal subunit protein eS28Family
IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
IPR000702Large ribosomal subunit protein uL6-likeFamily
BC [auth dd]IPR001209Small ribosomal subunit protein uS14Family
BC [auth dd]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
BC [auth dd]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
BC [auth dd]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
CC [auth ee]IPR039415Ubiquitin-like protein FUBIDomain
CC [auth ee]IPR019956Ubiquitin domainDomain
CC [auth ee]IPR019954Ubiquitin conserved siteConserved Site
CC [auth ee]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
CC [auth ee]IPR000626Ubiquitin-like domainDomain
CC [auth ee]IPR006846Small ribosomal subunit protein eS30Family
DC [auth ff]IPR019954Ubiquitin conserved siteConserved Site
DC [auth ff]IPR000626Ubiquitin-like domainDomain
DC [auth ff]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
DC [auth ff]IPR002906Small ribosomal subunit protein eS31Domain
DC [auth ff]IPR019956Ubiquitin domainDomain
DC [auth ff]IPR050158Ubiquitin and ubiquitin-likeFamily
DC [auth ff]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
DC [auth ff]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EC [auth gg]IPR019775WD40 repeat, conserved siteConserved Site
EC [auth gg]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
EC [auth gg]IPR045223Small ribosomal subunit protein RACK1-likeFamily
EC [auth gg]IPR001680WD40 repeatRepeat
EC [auth gg]IPR020472G-protein beta WD-40 repeatRepeat
EC [auth gg]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
IPR016180Large ribosomal subunit protein uL16 domainDomain
IPR047873Large ribosomal subunit protein uL16Family
IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
HC [auth jj]SEP Parent Component: SER

RESIDAA0037

PSI-MOD :  O-phospho-L-serine MOD:00046