5M2U | pdb_00005m2u

The Structure of the Ycf54 protein from Synechocystis sp. PCC6803

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Ycf54-like	8090385	3002438	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ycf54-like	8090385	3002438	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ycf54-like	8090385	3002438	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ycf54-like	8090385	3002438	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Ras	e5m2uD1	A: a/b three-layered sandwiches	X: Small envelope protein M	H: Small envelope protein M	T: Small envelope protein M	F: Ras	ECOD (v294.1)
C	Ras	e5m2uC1	A: a/b three-layered sandwiches	X: Small envelope protein M	H: Small envelope protein M	T: Small envelope protein M	F: Ras	ECOD (v294.1)
B	Ras	e5m2uB1	A: a/b three-layered sandwiches	X: Small envelope protein M	H: Small envelope protein M	T: Small envelope protein M	F: Ras	ECOD (v294.1)
A	Ras	e5m2uA1	A: a/b three-layered sandwiches	X: Small envelope protein M	H: Small envelope protein M	T: Small envelope protein M	F: Ras	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.30.70.1860	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Uncharacterised protein family Ycf54	CATH (4.3.0)
C	3.30.70.1860	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Uncharacterised protein family Ycf54	CATH (4.3.0)
B	3.30.70.1860	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Uncharacterised protein family Ycf54	CATH (4.3.0)
A	3.30.70.1860	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	Uncharacterised protein family Ycf54	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF10674	Ycf54 protein (Ycf54)	Ycf54 protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Ycf54	-	pigment metabolic process porphyrin-containing compound biosynthetic process tetrapyrrole metabolic process chlorophyll metabolic process pigment biosynthetic process tetrapyrrole biosynthetic process biosynthetic process metabolic process cellular process porphyrin-containing compound metabolic process chlorophyll biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR038409	Ycf54-like superfamily	Homologous Superfamily
A, B, C, D	IPR019616	Ycf54 protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.