5MBY
Crystal Structure of Arg184Gln mutant of Human Prolidase with Mn ions and GlyPro ligand
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Peptidase_M24 | e5mbyA1 | A: a+b duplicates or obligate multimers | X: Creatinase/aminopeptidase-like | H: Creatinase/aminopeptidase (From Topology) | T: Creatinase/aminopeptidase | F: Peptidase_M24 | ECOD (1.6) |
A | AMP_N | e5mbyA2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Creatinase/prolidase N-terminal domain (From Topology) | T: Creatinase/prolidase N-terminal domain | F: AMP_N | ECOD (1.6) |
B | Peptidase_M24 | e5mbyB1 | A: a+b duplicates or obligate multimers | X: Creatinase/aminopeptidase-like | H: Creatinase/aminopeptidase (From Topology) | T: Creatinase/aminopeptidase | F: Peptidase_M24 | ECOD (1.6) |
B | AMP_N | e5mbyB2 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Creatinase/prolidase N-terminal domain (From Topology) | T: Creatinase/prolidase N-terminal domain | F: AMP_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.350.10 | Alpha Beta | 3-Layer(aba) Sandwich | Creatine Amidinohydrolase | Chain A, domain 1 | CATH (4.3.0) |
A | 3.90.230.10 | Alpha Beta | Alpha-Beta Complex | Creatine Amidinohydrolase | Creatinase/methionine aminopeptidase superfamily | CATH (4.3.0) |
B | 3.40.350.10 | Alpha Beta | 3-Layer(aba) Sandwich | Creatine Amidinohydrolase | Chain A, domain 1 | CATH (4.3.0) |
B | 3.90.230.10 | Alpha Beta | Alpha-Beta Complex | Creatine Amidinohydrolase | Creatinase/methionine aminopeptidase superfamily | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF05195 | Aminopeptidase P, N-terminal domain (AMP_N) | Aminopeptidase P, N-terminal domain | This domain is structurally very similar [1] to the creatinase N-terminal domain (Pfam:PF01321). However, little or no sequence similarity exists between the two families. | Domain | |
PF00557 | Metallopeptidase family M24 (Peptidase_M24) | Metallopeptidase family M24 | This family contains metallopeptidases. It also contains non-peptidase homologues such as the N terminal domain of Spt16 which is a histone H3-H4 binding module [3]. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001131 | Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site | Conserved Site | |
IPR007865 | Aminopeptidase P, N-terminal | Domain | |
IPR029149 | Creatinase/Aminopeptidase P/Spt16, N-terminal | Homologous Superfamily | |
IPR052433 | Xaa-Pro dipeptidase-like | Family | |
IPR036005 | Creatinase/aminopeptidase-like | Homologous Superfamily | |
IPR000994 | Peptidase M24 | Domain |