5MKV | pdb_00005mkv

Crystal Structure of Human Dihydropyrimidinease-like 2 (DPYSL2A)/Collapsin Response Mediator Protein (CRMP2) residues 13-516

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5mkvA1	A: helical bundle domain in reverse transcriptase-like polymerases	X: helical bundle domain in reverse transcriptase-like polymerases	H: CARF (CRISPR-associated Rossmann fold) domains	T: MCM_N	F:	ECOD (20:10:01)
B		e5mkvB1	A: helical bundle domain in reverse transcriptase-like polymerases	X: helical bundle domain in reverse transcriptase-like polymerases	H: CARF (CRISPR-associated Rossmann fold) domains	T: MCM_N	F:	ECOD (20:10:01)
C		e5mkvC1	A: helical bundle domain in reverse transcriptase-like polymerases	X: helical bundle domain in reverse transcriptase-like polymerases	H: CARF (CRISPR-associated Rossmann fold) domains	T: MCM_N	F:	ECOD (20:10:01)
D		e5mkvD1	A: helical bundle domain in reverse transcriptase-like polymerases	X: helical bundle domain in reverse transcriptase-like polymerases	H: CARF (CRISPR-associated Rossmann fold) domains	T: MCM_N	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.40.10	Mainly Beta	Roll	Urease, subunit C	domain 1	CATH (4.3.0)
A	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
B	2.30.40.10	Mainly Beta	Roll	Urease, subunit C	domain 1	CATH (4.3.0)
B	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
C	2.30.40.10	Mainly Beta	Roll	Urease, subunit C	domain 1	CATH (4.3.0)
C	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)
D	2.30.40.10	Mainly Beta	Roll	Urease, subunit C	domain 1	CATH (4.3.0)
D	3.20.20.140	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Metal-dependent hydrolases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01979	Amidohydrolase family (Amidohydro_1)	Amidohydrolase family	This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisatio ...	This family of enzymes are a a large metal dependent hydrolase superfamily [1]. The family includes Adenine deaminase EC:3.5.4.2 that hydrolyses adenine to form hypoxanthine and ammonia. Adenine deaminases reaction is important for adenine utilisation as a purine and also as a nitrogen source [2]. This family also includes dihydroorotase and N-acetylglucosamine-6-phosphate deacetylases, EC:3.5.1.25 These enzymes catalyse the reaction N-acetyl-D-glucosamine 6-phosphate + H2O <=> D-glucosamine 6-phosphate + acetate. This family includes the catalytic domain of urease alpha subunit [3]. Dihydroorotases (EC:3.5.2.3) are also included [4-5].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Dihydropyrimidinase-related protein 2	hydrolase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds dihydropyrimidinase activity identical protein binding protein binding binding	cellular component organization organelle organization cellular process cellular component organization or biogenesis cytoskeleton organization nucleobase-containing compound metabolic process primary metabolic process metabolic process developmental process cellular developmental process cell differentiation multicellular organism development multicellular organismal process anatomical structure development cellular component organization organelle organization cellular process cellular component organization or biogenesis cytoskeleton organization nucleobase-containing compound metabolic process primary metabolic process metabolic process developmental process cellular developmental process cell differentiation multicellular organism development multicellular organismal process anatomical structure development nervous system development system development localization import into cell transport endocytosis establishment of localization vesicle-mediated transport cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation signal transduction cell communication	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure membrane-bounded organelle cell projection cellular anatomical structure organelle cilium plasma membrane bounded cell projection extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane intracellular organelle mitotic spindle cytoskeleton spindle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR006680	Amidohydrolase-related	Domain
A, B, C, D	IPR011059	Metal-dependent hydrolase, composite domain superfamily	Homologous Superfamily
A, B, C, D	IPR032466	Metal-dependent hydrolase	Homologous Superfamily
A, B, C, D	IPR050378	Metallo-dependent Hydrolases Superfamily	Family
A, B, C, D	IPR011778	Hydantoinase/dihydropyrimidinase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: Q16555	Alzheimer disease paranoid schizophrenia delusional disorder gastric carcinoma limb-girdle muscular dystrophy lymphoplasmacytic lymphoma non-small cell lung carcinoma Acute Confusional Senile Dementia tuberculosis bipolar disorder colorectal cancer dermatomyositis Emery-Dreifuss muscular dystrophy invasive ductal breast carcinoma lung adenocarcinoma Alzheimer disease paranoid schizophrenia delusional disorder gastric carcinoma limb-girdle muscular dystrophy lymphoplasmacytic lymphoma non-small cell lung carcinoma Acute Confusional Senile Dementia tuberculosis bipolar disorder colorectal cancer dermatomyositis Emery-Dreifuss muscular dystrophy invasive ductal breast carcinoma lung adenocarcinoma malignant pancreatic neoplasm osteoarthritis acute myeloid leukemia ovarian cancer atypical teratoid rhabdoid tumor ulcerative colitis breast cancer Duchenne muscular dystrophy large cell medulloblastoma lung cancer osteoarthritis susceptibility 1 pancreatic ductal adenocarcinoma subependymal giant cell astrocytoma Becker muscular dystrophy breast carcinoma depressive disorder ductal breast carcinoma in situ

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.