5NPL

Crystal structure of hexameric CBS-CP12 protein from bloom-forming cyanobacteria, Yb-derivative at 2.8 A resolution


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BUNK_F_TYPEe5nplB3 A: alpha bundlesX: Long alpha-hairpinH: CP12 (From Topology)T: CP12F: UNK_F_TYPEECOD (1.6)
BIMPDH_2nd_1e5nplB2 A: a+b duplicates or obligate multimersX: CBS-domain (From Topology)H: CBS-domain (From Topology)T: CBS-domainF: IMPDH_2nd_1ECOD (1.6)
CUNK_F_TYPEe5nplC3 A: alpha bundlesX: Long alpha-hairpinH: CP12 (From Topology)T: CP12F: UNK_F_TYPEECOD (1.6)
CIMPDH_2nd_1e5nplC2 A: a+b duplicates or obligate multimersX: CBS-domain (From Topology)H: CBS-domain (From Topology)T: CBS-domainF: IMPDH_2nd_1ECOD (1.6)
AUNK_F_TYPEe5nplA2 A: alpha bundlesX: Long alpha-hairpinH: CP12 (From Topology)T: CP12F: UNK_F_TYPEECOD (1.6)
AIMPDH_2nd_1e5nplA1 A: a+b duplicates or obligate multimersX: CBS-domain (From Topology)H: CBS-domain (From Topology)T: CBS-domainF: IMPDH_2nd_1ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C
PF02672CP12 domain (CP12)CP12 domain- Family
A, B, C
PF00571CBS domain (CBS)CBS domainCBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands ...CBS domains are small intracellular modules that pair together to form a stable globular domain [2]. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain [6]. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet [5]. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet [4]. CBS domain pairs from AMPK bind AMP or ATP [5]. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP [5].
Domain

InterPro: Protein Family Classification InterPro Database Homepage