5NW7

Crystal structure of candida albicans phosphomannose isomerase in complex with inhibitor

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d5nw7a_	All beta proteins	Double-stranded beta-helix	RmlC-like cupins	Type I phosphomannose isomerase	automated matches	Yeast (Candida albicans ) [TaxId: 5476 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	RmlC-like cupins	8043042	3001825	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PMI_typeI_C	e5nw7A3	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: PMI_typeI_C	ECOD (1.6)
A	PMI_typeI_N	e5nw7A2	A: beta sandwiches	X: jelly-roll	H: Double-stranded beta-helix (From Topology)	T: Double-stranded beta-helix	F: PMI_typeI_N	ECOD (1.6)
A	PMI_typeI_N_1	e5nw7A1	A: alpha arrays	X: Phosphomannose isomerase helical insertion domain (From Topology)	H: Phosphomannose isomerase helical insertion domain (From Topology)	T: Phosphomannose isomerase helical insertion domain	F: PMI_typeI_N_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.10	Mainly Beta	Sandwich	Jelly Rolls	Jelly Rolls	CATH (4.3.0)
A	1.10.441.10	Mainly Alpha	Orthogonal Bundle	Phosphomannose Isomerase	domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01238	Phosphomannose isomerase type I C-terminal (PMI_typeI_C)	Phosphomannose isomerase type I C-terminal	This is the C-terminal domain of Phosphomannose isomerase type I enzymes (EC 5.3.1.8), which contains antiparallel beta-strands in an extended jelly roll topology with short loops connecting the strands [1].	Domain
A	PF20511	Phosphomannose isomerase type I, catalytic domain (PMI_typeI_cat)	Phosphomannose isomerase type I, catalytic domain	This entry represents the catalytic domain of Phosphomannose isomerase type I enzymes (EC 5.3.1.8) which contains a zinc-binding site. It is composed of beta-strands connected by long loops in a jelly roll conformation [1].	Domain
A	PF20512	Phosphomannose isomerase type I, helical insertion domain (PMI_typeI_hel)	Phosphomannose isomerase type I, helical insertion domain	This entry represents the alpha-helical insertion domain of Phosphomannose isomerase type I enzymes (EC 5.3.1.8), in which the helices are packed closely, connected by short turns and loops. This domain packs closely against the catalytic domain, int ...	This entry represents the alpha-helical insertion domain of Phosphomannose isomerase type I enzymes (EC 5.3.1.8), in which the helices are packed closely, connected by short turns and loops. This domain packs closely against the catalytic domain, interrupting it [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Mannose-6-phosphate isomerase	isomerase activity intramolecular oxidoreductase activity, interconverting aldoses and ketoses intramolecular oxidoreductase activity mannose-6-phosphate isomerase activity catalytic activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process protein glycosylation macromolecule biosynthetic process biosynthetic process glycosylation macromolecule modification macromolecule glycosylation metabolic process cellular process protein metabolic process carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process protein glycosylation macromolecule biosynthetic process biosynthetic process glycosylation macromolecule modification macromolecule glycosylation metabolic process cellular process protein metabolic process macromolecule metabolic process protein modification process carbohydrate metabolic process nucleoside phosphate metabolic process nucleotide-sugar metabolic process nucleobase-containing compound biosynthetic process nucleobase-containing compound metabolic process organophosphate metabolic process organophosphate biosynthetic process nucleobase-containing small molecule metabolic process nucleoside phosphate biosynthetic process phosphate-containing compound metabolic process GDP-mannose biosynthetic process small molecule metabolic process nucleotide-sugar biosynthetic process phosphorus metabolic process GDP-mannose metabolic process fungal-type cell wall organization cellular component organization fungal-type cell wall organization or biogenesis cell wall organization or biogenesis cell wall organization cellular component organization or biogenesis external encapsulating structure organization mannoprotein biosynthetic process cell wall mannoprotein biosynthetic process mannoprotein metabolic process cell wall glycoprotein biosynthetic process cell wall macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR018050	Phosphomannose isomerase, type I, conserved site	Conserved Site
A	IPR046457	Phosphomannose isomerase type I, catalytic domain	Domain
A	IPR014710	RmlC-like jelly roll fold	Homologous Superfamily
A	IPR001250	Mannose-6-phosphate isomerase, type I	Family
A	IPR016305	Mannose-6-phosphate isomerase	Family
A	IPR011051	RmlC-like cupin domain superfamily	Homologous Superfamily
A	IPR046458	Phosphomannose isomerase type I, helical insertion domain	Domain
A	IPR046456	Phosphomannose isomerase type I, C-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.