5THR | pdb_00005thr

Cryo-EM structure of a BG505 Env-sCD4-17b-8ANC195 complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054493 3000071 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054493 3000071 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054493 3000071 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyVirus ectodomain 8085614 3001628 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyVirus ectodomain 8085614 3001628 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyVirus ectodomain 8085614 3001628 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ue5thrU1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Se5thrS1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Qe5thrQ1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Pe5thrP1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Re5thrR1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Te5thrT1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Me5thrM1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Ne5thrN1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Oe5thrO1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Je5thrJ1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Le5thrL1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Ke5thrK1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Ie5thrI1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
He5thrH1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Ge5thrG1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
De5thrD1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Ee5thrE1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Fe5thrF1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Ae5thrA1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Ce5thrC1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)
Be5thrB1 A: a/b three-layered sandwichesX: Type II ABC importer transmembrane domain foldH: DNA mismatch repair protein MutL regulatory subdomainT: DNA mismatch repair protein MutL regulatory subdomainF:ECOD (v294.1)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
Q, S, U
Fab 8ANC195 L-KAPPA Homo sapiens (human) IGKV1-5*01, IGKV1-5*02, IGKV1-5*03, IGKJ1*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202611-0)
P, R, T
Fab 8ANC195 VH-CH1 Homo sapiens (human) IGHV1-69*01, IGHV1-69*04, IGHV1-69*06, IGHV1-69*09, IGHV1-69*10, IGHV1-69*11, IGHV1-69*12, IGHV1-69*13, IGHV1-69*14, IGHV1-69D*01, IGHV1-69*15, IGHV1-69*17, IGHJ5*01, IGHG1*03, IGHG1*08, IGHG1*06 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202611-0)
M, N, O
Fab 17b VH-CH1 Homo sapiens (human) IGHV1-69*02, IGHV1-69*04, IGHV1-69*08, IGHV1-69*09, IGHJ5*01, IGHJ5*02, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05, IGHG1*12, IGHG1*14, IGHG1*13, IGHG1*09, IGHG1*10, IGHG1*07, IGHG1*11 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202611-0)
J, K, L
Fab 17b L-KAPPA Homo sapiens (human) IGKV3-15*01, IGKV3D-15*01, IGKJ5*01, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202611-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
Q, S, U
Light ChainIGKV1 Kappabg505 sosip gp41SAbDab (2026-03-27)
M, N, O
Heavy ChainIGHV1 -bg505 sosip gp120SAbDab (2026-03-27)
J, K, L
Light ChainIGKV3 Kappabg505 sosip gp120SAbDab (2026-03-27)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
G, H, I
PF00047Immunoglobulin domain (ig)Immunoglobulin domainMembers of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-prote ...Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Q, S, U
8ANC195 G52K5 VL domain---
P, R, T
8ANC195 G52K5 VH domain---
M, N, O
17b Fab VH domain---
J, K, L
17b Fab VL domain---
G, H, I
T-cell surface glycoprotein CD4
D, E, F
BG505 SOSIP gp120
A, B, C
BG505 SOSIP gp41

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
G, H, I
PharosP01730