5VC9 | pdb_00005vc9

Zinc finger of human CXXC4 in complex with CpG DNA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	CXXC zinc-finger domain	8059533	3002156	SCOP2B (2022-06-29)
C	SCOP2 Family	CXXC zinc-finger domain	8059532	4006601	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	CXXC zinc-finger domain	8059533	3002156	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F		e5vc9F1	A: Four-helical up-and-down bundle	X: Immunoglobulin-related	H: Common fold of diphtheria toxin/transcription factors/cytochrome f	T:	F:	ECOD (20:10:01)
C		e5vc9C1	A: Four-helical up-and-down bundle	X: Immunoglobulin-related	H: Common fold of diphtheria toxin/transcription factors/cytochrome f	T:	F:	ECOD (20:10:01)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, F	CXXC-type zinc finger protein 4	protein binding binding PDZ domain binding protein domain specific binding sequence-specific DNA binding DNA binding nucleoside phosphate binding nucleotide binding nucleic acid binding heterocyclic compound binding methyl-CpG binding small molecule binding cation binding transition metal ion binding protein binding binding PDZ domain binding protein domain specific binding sequence-specific DNA binding DNA binding nucleoside phosphate binding nucleotide binding nucleic acid binding heterocyclic compound binding methyl-CpG binding small molecule binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding	cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell communication cellular process signal transduction Wnt signaling pathway negative regulation of signaling negative regulation of biological process regulation of signal transduction cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell communication cellular process signal transduction Wnt signaling pathway negative regulation of signaling negative regulation of biological process regulation of signal transduction negative regulation of cell communication negative regulation of Wnt signaling pathway negative regulation of cellular process regulation of signaling regulation of Wnt signaling pathway negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication developmental process multicellular organismal process embryonic pattern specification dorsal/ventral axis specification pattern specification process embryo development regionalization embryonic axis specification multicellular organism development dorsal/ventral pattern formation zygotic specification of dorsal/ventral axis anatomical structure development axis specification	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm intracellular membrane-bounded organelle vesicle nucleus
A, B, D, E	CpG DNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, F	IPR002857	Zinc finger, CXXC-type	Domain
C, F	IPR040388	CXXC-type zinc finger protein CXXC4/CXXC5	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, F	Pharos: Q9H2H0	lung carcinoma medulloblastoma psoriasis malignant ependymoma osteosarcoma malignant glioma pituitary cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

Prepare Data

Validate Data

Deposit Data

Help and Resources

.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 5VC9 | pdb_00005vc9