5VCM | pdb_00005vcm

Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase with bound UDP and Manganese

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e5vcmA1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: zf-C3HC4_5	F:	ECOD (20:10:01)
B		e5vcmB1	A: P-loop domains-like	X: Cas7-related	H: CRISPR-associated protein Cas7f/Csy3	T: Metallophos	F:	ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF05060	N-acetylglucosaminyltransferase II (MGAT2) (MGAT2)	N-acetylglucosaminyltransferase II (MGAT2)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity UDP-glycosyltransferase activity glycosyltransferase activity catalytic activity, acting on a protein catalytic activity, acting on a glycoprotein alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity acetylglucosaminyltransferase activity transferase activity hexosyltransferase activity catalytic activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity UDP-glycosyltransferase activity glycosyltransferase activity catalytic activity, acting on a protein catalytic activity, acting on a glycoprotein alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity acetylglucosaminyltransferase activity transferase activity hexosyltransferase activity catalytic activity cation binding manganese ion binding transition metal ion binding ion binding metal ion binding small molecule binding	carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process protein N-linked glycosylation macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process carbohydrate metabolic process oligosaccharide biosynthetic process carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process protein N-linked glycosylation macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process carbohydrate metabolic process oligosaccharide biosynthetic process carbohydrate biosynthetic process oligosaccharide metabolic process viral gene expression viral protein processing viral process	membrane-bounded organelle intracellular anatomical structure Golgi apparatus subcompartment Golgi apparatus organelle subcompartment intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle Golgi stack cytoplasm membrane Golgi membrane membrane-bounded organelle intracellular anatomical structure Golgi apparatus subcompartment Golgi apparatus organelle subcompartment intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure organelle Golgi stack cytoplasm membrane Golgi membrane bounding membrane of organelle organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR007754	N-acetylglucosaminyltransferase II	Family
A, B	IPR029044	Nucleotide-diphospho-sugar transferases	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q10469	MGAT2-CDG congenital disorder of glycosylation Sjogren syndrome Abortion, Spontaneous exocrine pancreatic carcinoma glioblastoma intellectual disability malignant pancreatic neoplasm myopathy pilocytic astrocytoma gastric cancer hepatocellular carcinoma juvenile dermatomyositis medulloblastoma ovarian cancer MGAT2-CDG congenital disorder of glycosylation Sjogren syndrome Abortion, Spontaneous exocrine pancreatic carcinoma glioblastoma intellectual disability malignant pancreatic neoplasm myopathy pilocytic astrocytoma gastric cancer hepatocellular carcinoma juvenile dermatomyositis medulloblastoma ovarian cancer plasma cell myeloma tuberculosis gastric carcinoma inborn errors of metabolism lymphoplasmacytic lymphoma pancreatic ductal adenocarcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.