PCSK9 complex with Fab33
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| D [auth L] | C1-set_4 | e5vl7L2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
| D [auth L] | V-set | e5vl7L1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
| C [auth H] | V-set_8 | e5vl7H1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_8 | ECOD (1.6) |
| C [auth H] | C1-set_1 | e5vl7H2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
| B | PCSK9_C-CRD_2nd | e5vl7B3 | A: beta duplicates or obligate multimers | X: Resistin (From Topology) | H: Resistin (From Topology) | T: Resistin | F: PCSK9_C-CRD_2nd | ECOD (1.6) |
| B | PCSK9_C-CRD_1st | e5vl7B2 | A: beta duplicates or obligate multimers | X: Resistin (From Topology) | H: Resistin (From Topology) | T: Resistin | F: PCSK9_C-CRD_1st | ECOD (1.6) |
| B | PCSK9_C-CRD_3rd | e5vl7B1 | A: beta duplicates or obligate multimers | X: Resistin (From Topology) | H: Resistin (From Topology) | T: Resistin | F: PCSK9_C-CRD_3rd | ECOD (1.6) |
| B | Peptidase_S8 | e5vl7B4 | A: a/b three-layered sandwiches | X: Subtilisin-like | H: Subtilisin-like (From Topology) | T: Subtilisin-like | F: Peptidase_S8 | ECOD (1.6) |
| A | Inhibitor_I9 | e5vl7A1 | A: a+b two layers | X: Alpha-beta plaits | H: Protease propeptides/inhibitors (From Topology) | T: Protease propeptides/inhibitors | F: Inhibitor_I9 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| D [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| C [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| B | 3.40.50.200 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Peptidase S8/S53 domain | CATH (utative) |
| B | 2.60.120.690 | Mainly Beta | Sandwich | Jelly Rolls | Proprotein convertase subtilisin/kexin type 9 | CATH (utative) |
| A | 3.30.70.80 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | Peptidase S8 propeptide/proteinase inhibitor I9 | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| D [auth L] | Fab 33 | L-KAPPA | Homo sapiens (human) | IGKV1-12*01, IGKV1D-12*01, IGKV1-12*02, IGKV1D-12*02, IGKJ1*01, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202601-0) |
| C [auth H] | Fab 33 | VH-CH1 | Homo sapiens (human) | IGHV3-23*04, IGHJ4*01, IGHJ4*02, IGHJ4*03, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202601-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| D [auth L] | Light Chain | IGKV1 | Kappa | proprotein convertase subtilisin/kexin type 9 | SAbDab (2026-01-16) |
| C [auth H] | Heavy Chain | IGHV3 | - | proprotein convertase subtilisin/kexin type 9 | SAbDab (2026-01-16) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF18463 | Proprotein convertase subtilisin-like/kexin type 9 C-terminal domain (PCSK9_C3) | Proprotein convertase subtilisin-like/kexin type 9 C-terminal domain | This entry represents a subdomain found in the C-terminal cysteine/histidine-rich domain (CRD) of PCSK9 (also known as neural apoptosis-regulated convertase, NARC-1) [1]. PCSK9 has been shown to regulate circulating LDL-R levels by controlling LDL-R ... | Domain | |
| PF18464 | Proprotein convertase subtilisin-like/kexin type 9 C-terminal domain (PCSK9_C2) | Proprotein convertase subtilisin-like/kexin type 9 C-terminal domain | This entry represents a subdomain found in the C-terminal cysteine/histidine-rich domain (CRD) of PCSK9 (also known as neural apoptosis-regulated convertase, NARC-1) [1]. PCSK9 has been shown to regulate circulating LDL-R levels by controlling LDL-R ... | Domain | |
| PF05922 | Peptidase inhibitor I9 (Inhibitor_I9) | Peptidase inhibitor I9 | This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of ... | Domain |














