5YFP | pdb_00005yfp

Cryo-EM Structure of the Exocyst Complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
HSCOP2B SuperfamilyCullin repeat-like 8039534 3000059 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCullin repeat-like 8037698 3000059 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCullin repeat-like 8052698 3000059 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF16528Exocyst component 84 C-terminal (Exo84_C)Exocyst component 84 C-terminal- Repeat
PF25345PH domain found in exocyst complex component Exo84 (PH_EXO84)PH domain found in exocyst complex component Exo84This entry represents a pleckstrin homology (PH) domain found in the exocyst complex component Exo84. Based on structural studies, this domain is located between the CorEx motif and CAT domains of Exo84, where it helps mediate interactions with other ...This entry represents a pleckstrin homology (PH) domain found in the exocyst complex component Exo84. Based on structural studies, this domain is located between the CorEx motif and CAT domains of Exo84, where it helps mediate interactions with other exocyst subunits Sec10 and Sec15. This domain plays an important role in the assembly and organization of the exocyst complex, which is critical for tethering secretory vesicles to the plasma membrane.
Domain
PF08700Vps51/EXO84/COG1 N-terminal (VPS51_Exo84_N)Vps51/EXO84/COG1 N-terminal- Repeat
PF03081Exo70 exocyst complex subunit C-terminal (Exo70_C)Exo70 exocyst complex subunit C-terminal- Repeat
PF20669Exocyst complex component Exo70 N-terminal (Exo70_N)Exocyst complex component Exo70 N-terminal- Repeat
PF20651Exocyst complex component EXOC6/Sec15, N-terminal (EXOC6_Sec15_N)Exocyst complex component EXOC6/Sec15, N-terminal- Repeat
PF04091Exocyst complex subunit Sec15 C-terminal (Sec15_C)Exocyst complex subunit Sec15 C-terminal- Repeat
PF07393Exocyst complex component Sec10-like, alpha-helical bundle (Sec10_HB)Exocyst complex component Sec10-like, alpha-helical bundle- Repeat
PF20667Exocyst complex component Sec10, N-terminal (Sec10_N)Exocyst complex component Sec10, N-terminal- Repeat
PF04048Exocyst complex component Sec8 N-terminal (Sec8_N)Exocyst complex component Sec8 N-terminal- Repeat
PF06046Exocyst complex component Sec6 (Sec6)Exocyst complex component Sec6- Repeat
PF15469Exocyst complex component Sec5 (Sec5)Exocyst complex component Sec5- Repeat
PF09763Exocyst complex component Sec3, coiled-coil (Sec3_CC)Exocyst complex component Sec3, coiled-coil- Repeat
PF20654Exocyst complex component Sec3, C-terminal (Sec3_C-term)Exocyst complex component Sec3, C-terminal- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Exocyst complex component EXO84-
Exocyst complex component EXO70
Exocyst complex component SEC15
Exocyst complex component SEC10-
Exocyst complex component SEC8-
Exocyst complex component SEC6
Exocyst complex component SEC5-
Exocyst complex component SEC3

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR042561Exocyst component Exo84, C-terminal, subdomain 1Homologous Superfamily
IPR033961Exocyst complex component Exo84Family
IPR032403Exocyst component Exo84, C-terminalDomain
IPR011993PH-like domain superfamilyHomologous Superfamily
IPR016159Cullin repeat-like-containing domain superfamilyHomologous Superfamily
IPR042560Exocyst component Exo84, C-terminal, subdomain 2Homologous Superfamily
IPR004140Exocyst complex component Exo70Family
IPR046364Exocyst complex subunit Exo70, C-terminalDomain
IPR016159Cullin repeat-like-containing domain superfamilyHomologous Superfamily
IPR007225Exocyst complex component EXOC6/Sec15Family
IPR042045Exocyst complex component EXOC6/Sec15, C-terminal, domain 1Homologous Superfamily
IPR042044EXOC6/PINT-1/Sec15/Tip20, C-terminal, domain 2Homologous Superfamily
IPR048359Exocyst complex component EXOC6/Sec15, N-terminal domainDomain
IPR046361Exocyst complex subunit EXOC6/Sec15, C-terminalDomain
IPR048625Exocyst complex component Sec10, N-terminalDomain
IPR048627Exocyst complex component Sec10-like, alpha-helical bundleDomain
IPR009976Exocyst complex component Sec10-likeFamily
IPR039682Exocyst complex component Sec8/EXOC4Family
IPR007191Exocyst complex component Sec8, N-terminalDomain
IPR048630Exocyst complex component Sec8, middle helical bundleDomain
IPR010326Exocyst complex component EXOC3/Sec6Family
IPR042532Exocyst complex component EXOC3/Sec6, C-terminal domainHomologous Superfamily
IPR029175Exocyst complex component EXOC2/Sec5Family
IPR039481Exocyst complex component EXOC2/Sec5, N-terminal domainDomain
IPR048628Exocyst complex component Sec3, C-terminalDomain
IPR028258Exocyst complex component Sec3, PIP2-binding N-terminal domainDomain
IPR019160Exocyst complex component Sec3, coiled-coilDomain