5YKE

Structure of pancreatic ATP-sensitive potassium channel bound with glibenclamide and ATPgammaS (focused refinement on TM at 4.11A)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	IRK_N	e5ykeA1	A: alpha complex topology	X: Voltage-gated ion channels (From Topology)	H: Voltage-gated ion channels (From Topology)	T: Voltage-gated ion channels	F: IRK_N	ECOD (1.6)
C	IRK_N	e5ykeC1	A: alpha complex topology	X: Voltage-gated ion channels (From Topology)	H: Voltage-gated ion channels (From Topology)	T: Voltage-gated ion channels	F: IRK_N	ECOD (1.6)
E	IRK_N	e5ykeE1	A: alpha complex topology	X: Voltage-gated ion channels (From Topology)	H: Voltage-gated ion channels (From Topology)	T: Voltage-gated ion channels	F: IRK_N	ECOD (1.6)
G	IRK_N	e5ykeG1	A: alpha complex topology	X: Voltage-gated ion channels (From Topology)	H: Voltage-gated ion channels (From Topology)	T: Voltage-gated ion channels	F: IRK_N	ECOD (1.6)
B	ABC_membrane	e5ykeB2	A: alpha bundles	X: Type II ABC exporter transmembrane domain fold	H: Type I ABC exporter transmembrane domain fold (From Topology)	T: Type I ABC exporter transmembrane domain fold	F: ABC_membrane	ECOD (1.6)
D	ABC_membrane	e5ykeD2	A: alpha bundles	X: Type II ABC exporter transmembrane domain fold	H: Type I ABC exporter transmembrane domain fold (From Topology)	T: Type I ABC exporter transmembrane domain fold	F: ABC_membrane	ECOD (1.6)
F	ABC_membrane	e5ykeF2	A: alpha bundles	X: Type II ABC exporter transmembrane domain fold	H: Type I ABC exporter transmembrane domain fold (From Topology)	T: Type I ABC exporter transmembrane domain fold	F: ABC_membrane	ECOD (1.6)
H	ABC_membrane	e5ykeH2	A: alpha bundles	X: Type II ABC exporter transmembrane domain fold	H: Type I ABC exporter transmembrane domain fold (From Topology)	T: Type I ABC exporter transmembrane domain fold	F: ABC_membrane	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H	PF00664	ABC transporter transmembrane region (ABC_membrane)	ABC transporter transmembrane region	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E, G	ATP-sensitive inward rectifier potassium channel 11	cytoskeletal protein binding ankyrin binding protein binding binding monoatomic cation transmembrane transporter activity active monoatomic ion transmembrane transporter activity active transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity ATPase-coupled monoatomic cation transmembrane transporter activity transmembrane transporter activity ATP-dependent activity cytoskeletal protein binding ankyrin binding protein binding binding monoatomic cation transmembrane transporter activity active monoatomic ion transmembrane transporter activity active transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity ATPase-coupled monoatomic cation transmembrane transporter activity transmembrane transporter activity ATP-dependent activity heat shock protein binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding passive transmembrane transporter activity gated channel activity monoatomic ion channel activity voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity cation binding potassium ion binding alkali metal ion binding metal ion binding transmembrane transporter binding ligand-gated channel activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity ligand-gated monoatomic cation channel activity inward rectifier potassium channel activity potassium ion transmembrane transporter activity potassium channel activity voltage-gated monoatomic cation channel activity ATP-activated inward rectifier potassium channel activity ligand-gated monoatomic ion channel activity monoatomic cation channel activity voltage-gated potassium channel activity metal ion transmembrane transporter activity	response to stimulus response to chemical response to xenobiotic stimulus positive regulation of protein localization to plasma membrane protein localization regulation of localization cellular localization regulation of cellular process regulation of protein localization positive regulation of biological process localization cellular macromolecule localization regulation of protein localization to membrane positive regulation of cellular process response to stimulus response to chemical response to xenobiotic stimulus positive regulation of protein localization to plasma membrane protein localization regulation of localization cellular localization regulation of cellular process regulation of protein localization positive regulation of biological process localization cellular macromolecule localization regulation of protein localization to membrane positive regulation of cellular process positive regulation of protein localization to cell periphery regulation of biological process protein localization to cell periphery protein localization to plasma membrane biological regulation positive regulation of protein localization to membrane localization within membrane regulation of protein localization to cell periphery protein localization to membrane regulation of cellular localization macromolecule localization positive regulation of protein localization cellular process regulation of protein localization to plasma membrane response to stress response to ischemia response to ketone response to lipid response to oxygen-containing compound response to testosterone response to organic cyclic compound cellular response to stimulus cellular response to nutrient levels response to nutrient levels apoptotic process cell death programmed cell death developmental process heart development multicellular organismal process cardiac muscle tissue development animal organ development tissue development striated muscle tissue development circulatory system development multicellular organism development ventricular cardiac muscle tissue development anatomical structure development muscle tissue development system development monosaccharide metabolic process carbohydrate metabolic process hexose metabolic process small molecule metabolic process metabolic process primary metabolic process glucose metabolic process response to decreased oxygen levels response to hypoxia response to oxygen levels response to abiotic stimulus transport regulation of transport monoatomic ion transmembrane transport regulation of monoatomic ion transport regulation of monoatomic ion transmembrane transport establishment of localization transmembrane transport regulation of transmembrane transport monoatomic ion transport response to stilbenoid response to resveratrol action potential regulation of biological quality regulation of membrane potential homeostatic process cellular response to glucose stimulus intracellular glucose homeostasis cellular response to oxygen-containing compound response to hexose cellular response to carbohydrate stimulus cellular response to chemical stimulus cellular homeostasis response to monosaccharide response to carbohydrate chemical homeostasis response to glucose glucose homeostasis carbohydrate homeostasis cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus signaling intracellular signal transduction cell communication calcium-mediated signaling intracellular signaling cassette signal transduction CAMKK-AMPK signaling cascade system process nervous system process negative regulation of protein transport establishment of protein localization nitrogen compound transport negative regulation of biological process negative regulation of transport negative regulation of secretion negative regulation of hormone secretion negative regulation of secretion by cell regulation of peptide hormone secretion negative regulation of peptide hormone secretion regulation of hormone levels establishment of protein localization to extracellular region negative regulation of establishment of protein localization protein secretion regulation of protein secretion regulation of secretion negative regulation of protein secretion regulation of hormone secretion regulation of peptide secretion negative regulation of signaling hormone secretion negative regulation of cell communication protein localization to extracellular region negative regulation of peptide secretion peptide secretion secretion by cell regulation of secretion by cell amide transport signal release negative regulation of cellular process negative regulation of protein localization regulation of signaling secretion regulation of peptide transport regulation of establishment of protein localization cell-cell signaling export from cell regulation of protein transport peptide transport negative regulation of insulin secretion protein transport regulation of insulin secretion peptide hormone secretion hormone transport regulation of cell communication insulin secretion inorganic ion transmembrane transport inorganic cation transmembrane transport potassium ion transport monoatomic cation transport metal ion transport response to peptide cellular response to tumor necrosis factor response to cytokine cellular response to cytokine stimulus response to tumor necrosis factor determination of adult lifespan cellular response to nicotine response to nicotine response to organonitrogen compound response to organophosphorus response to nitrogen compound response to ATP response to purine-containing compound import into cell import across plasma membrane potassium ion transmembrane transport inorganic cation import across plasma membrane monoatomic cation transmembrane transport inorganic ion import across plasma membrane potassium ion import across plasma membrane response to estradiol	cell periphery sarcolemma plasma membrane membrane T-tubule cellular anatomical entity protein-containing complex plasma membrane protein complex potassium channel complex membrane protein complex cation channel complex transporter complex transmembrane transporter complex inward rectifying potassium channel cell periphery sarcolemma plasma membrane membrane T-tubule cellular anatomical entity protein-containing complex plasma membrane protein complex potassium channel complex membrane protein complex cation channel complex transporter complex transmembrane transporter complex inward rectifying potassium channel monoatomic ion channel complex membrane-bounded organelle intracellular organelle organelle envelope intracellular anatomical structure organelle nuclear envelope nucleus intracellular membrane-bounded organelle endomembrane system presynapse synapse cell junction presynaptic membrane plasma membrane region synaptic membrane cytoplasm glutamatergic synapse axon cell leading edge axolemma neuron projection leading edge membrane plasma membrane bounded cell projection neuron projection membrane cell projection main axon cell projection membrane somatodendritic compartment cell body neuronal cell body cell-cell junction intercalated disc anchoring junction cell-cell contact zone acrosomal vesicle intracellular vesicle cytoplasmic vesicle secretory granule secretory vesicle vesicle cell body fiber endosome
B, D, F, H	ATP-binding cassette sub-family C member 8 isoform X2	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding protein binding transmembrane transporter binding monoatomic cation transmembrane transporter activity potassium ion transmembrane transporter activity monoatomic ion channel activity potassium channel activity monoatomic cation channel activity passive transmembrane transporter activity inorganic molecular entity transmembrane transporter activity inorganic cation transmembrane transporter activity channel activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity ABC-type transporter activity active transmembrane transporter activity primary active transmembrane transporter activity ATPase-coupled transmembrane transporter activity ATP-dependent activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity active monoatomic ion transmembrane transporter activity ATPase-coupled monoatomic cation transmembrane transporter activity molecular transducer activity sulfonylurea receptor activity transmembrane signaling receptor activity signaling receptor activity	protein localization cellular response to stimulus positive regulation of cell communication regulation of localization establishment of protein localization nitrogen compound transport regulation of cellular process response to stimulus positive regulation of establishment of protein localization cell communication localization carbohydrate homeostasis cellular macromolecule localization establishment of localization in cell positive regulation of insulin secretion involved in cellular response to glucose stimulus protein localization cellular response to stimulus positive regulation of cell communication regulation of localization establishment of protein localization nitrogen compound transport regulation of cellular process response to stimulus positive regulation of establishment of protein localization cell communication localization carbohydrate homeostasis cellular macromolecule localization establishment of localization in cell positive regulation of insulin secretion involved in cellular response to glucose stimulus positive regulation of insulin secretion regulation of biological quality regulation of peptide hormone secretion regulation of biological process regulation of hormone levels positive regulation of peptide hormone secretion establishment of protein localization to extracellular region intracellular glucose homeostasis protein secretion establishment of localization cellular response to oxygen-containing compound regulation of protein secretion regulation of secretion cellular response to carbohydrate stimulus chemical homeostasis response to glucose response to chemical glucose homeostasis positive regulation of protein localization insulin secretion involved in cellular response to glucose stimulus cellular localization regulation of hormone secretion regulation of protein localization regulation of peptide secretion transport signaling homeostatic process positive regulation of biological process positive regulation of secretion by cell hormone secretion protein localization to extracellular region positive regulation of protein transport peptide secretion secretion by cell regulation of secretion by cell positive regulation of hormone secretion response to monosaccharide response to carbohydrate positive regulation of secretion amide transport signal release cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus positive regulation of cellular process positive regulation of peptide secretion regulation of signaling secretion regulation of transport regulation of peptide transport biological regulation regulation of establishment of protein localization cell-cell signaling export from cell response to oxygen-containing compound cellular response to glucose stimulus regulation of protein transport positive regulation of protein secretion peptide transport response to hexose cellular response to chemical stimulus cellular homeostasis positive regulation of transport protein transport regulation of cellular localization regulation of insulin secretion peptide hormone secretion macromolecule localization regulation of insulin secretion involved in cellular response to glucose stimulus hormone transport regulation of cell communication cellular process insulin secretion positive regulation of signaling synaptic transmission, glutamatergic L-amino acid transport L-glutamate import synaptic signaling glutamate secretion trans-synaptic signaling organic anion transport carboxylic acid transport neurotransmitter secretion neurotransmitter transport chemical synaptic transmission organic acid transport amino acid transport acidic amino acid transport signal release from synapse glutamate secretion, neurotransmission anterograde trans-synaptic signaling dicarboxylic acid transport multicellular organismal process system process nervous system process neuromuscular process negative regulation of protein transport negative regulation of biological process negative regulation of transport negative regulation of secretion negative regulation of hormone secretion negative regulation of secretion by cell negative regulation of peptide hormone secretion negative regulation of establishment of protein localization negative regulation of protein secretion negative regulation of signaling negative regulation of cell communication negative regulation of peptide secretion negative regulation of cellular process negative regulation of protein localization negative regulation of insulin secretion transmembrane transport inorganic ion transmembrane transport inorganic cation transmembrane transport	protein-containing complex plasma membrane protein complex membrane plasma membrane potassium channel complex membrane protein complex cation channel complex cellular anatomical entity transporter complex cell periphery transmembrane transporter complex inward rectifying potassium channel monoatomic ion channel complex presynapse protein-containing complex plasma membrane protein complex membrane plasma membrane potassium channel complex membrane protein complex cation channel complex cellular anatomical entity transporter complex cell periphery transmembrane transporter complex inward rectifying potassium channel monoatomic ion channel complex presynapse synapse cell junction

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E, G	IPR041647	Inward rectifier potassium channel, C-terminal	Domain
A, C, E, G	IPR040445	Potassium channel, inwardly rectifying, transmembrane domain	Domain
A, C, E, G	IPR016449	Potassium channel, inwardly rectifying, Kir	Family
A, C, E, G	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, C, E, G	IPR003279	Potassium channel, inwardly rectifying, Kir6.2	Family
A, C, E, G	IPR013518	Potassium channel, inwardly rectifying, Kir, cytoplasmic	Homologous Superfamily
B, D, F, H	IPR017871	ABC transporter-like, conserved site	Conserved Site
B, D, F, H	IPR003439	ABC transporter-like, ATP-binding domain	Domain
B, D, F, H	IPR000388	ATP-binding cassette sub-family C member 8/9	Family
B, D, F, H	IPR036640	ABC transporter type 1, transmembrane domain superfamily	Homologous Superfamily
B, D, F, H	IPR003593	AAA+ ATPase domain	Domain
B, D, F, H	IPR011527	ABC transporter type 1, transmembrane domain	Domain
B, D, F, H	IPR050173	ATP-binding cassette transporter C	Family
B, D, F, H	IPR000844	ATP-binding cassette subfamily C member 8	Family
B, D, F, H	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Channels: Potassium, Sodium, & Proton Ion-Selective	SUR1/Kir6.2 pancreatic ATP-sensitive K⁺ channel with bound bound with ATPγS

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.