5ZHF
Structure of VanYB unbound
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | VanY | e5zhfA1 | A: a+b two layers | X: Hedgehog/DD-peptidase (From Topology) | H: Hedgehog/DD-peptidase (From Topology) | T: Hedgehog/DD-peptidase | F: VanY | ECOD (1.6) |
B | VanY | e5zhfB1 | A: a+b two layers | X: Hedgehog/DD-peptidase (From Topology) | H: Hedgehog/DD-peptidase (From Topology) | T: Hedgehog/DD-peptidase | F: VanY | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.30.1380.10 | Alpha Beta | 2-Layer Sandwich | Muramoyl-pentapeptide Carboxypeptidase | domain 2 | CATH (4.3.0) |
B | 3.30.1380.10 | Alpha Beta | 2-Layer Sandwich | Muramoyl-pentapeptide Carboxypeptidase | domain 2 | CATH (4.3.0) |
AMR Gene: CARD Annotation CARD Database Homepage
Chains | Accession | Short Name | Description | Provenance Source (Version) |
---|---|---|---|---|
ARO:3002956 | vanY gene in vanB cluster | Also known as vanYB, is a vanY variant found in the vanB gene cluster. | CARD (3.3.0) |
AMR Gene Family: CARD Annotation CARD Database Homepage
Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
---|---|---|---|---|---|
ARO:3000234 | glycopeptide resistance gene cluster | glycopeptide antibiotic | antibiotic target alteration | CARD (3.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02557 | D-alanyl-D-alanine carboxypeptidase (VanY) | D-alanyl-D-alanine carboxypeptidase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR009045 | Hedgehog signalling/DD-peptidase zinc-binding domain superfamily | Homologous Superfamily | |
IPR052179 | Bacterial Peptidoglycan Processing Enzymes | Family | |
IPR003709 | Peptidase M15B | Domain |