6B46 | pdb_00006b46

Cryo-EM structure of Type I-F CRISPR crRNA-guided Csy surveillance complex with bound anti-CRISPR protein AcrF1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
I [auth L]	d6b46l1	Alpha and beta proteins (a+b)	Ferredoxin-like	Ferredoxin-like domains from CRISPR-associated proteins	CRISPR-associated protein Csy4-like	automated matches	(Pseudomonas aeruginosa UCBPP-PA14 ) [TaxId: 208963 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I [auth L]	SCOP2B Superfamily	CRISPR-associated proteins	8052171	3001554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth H]	3Beta_HSD, Polysacc_synt_2	e6b46H1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: 3Beta_HSD, Polysacc_synt_2	ECOD (v294.1)
E [auth G]	3Beta_HSD, Polysacc_synt_2	e6b46G1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: 3Beta_HSD, Polysacc_synt_2	ECOD (v294.1)
D [auth F]	3Beta_HSD, Polysacc_synt_2	e6b46F1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: 3Beta_HSD, Polysacc_synt_2	ECOD (v294.1)
C [auth E]	3Beta_HSD, Polysacc_synt_2	e6b46E1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: 3Beta_HSD, Polysacc_synt_2	ECOD (v294.1)
B [auth D]	3Beta_HSD, Polysacc_synt_2	e6b46D1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: 3Beta_HSD, Polysacc_synt_2	ECOD (v294.1)
A [auth C]	3Beta_HSD, Polysacc_synt_2	e6b46C1	A: a/b three-layered sandwiches	X: Periplasmic binding protein-like II	H: Rubredoxin-related	T: Tetrapyrrole methylase C-terminal domain	F: 3Beta_HSD, Polysacc_synt_2	ECOD (v294.1)
H [auth J]	Hydrolase	e6b46J1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Hydrolase	ECOD (v294.1)
G [auth I]	Hydrolase	e6b46I1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Hydrolase	ECOD (v294.1)
I [auth L]	Hydrolase	e6b46L1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Hydrolase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H [auth J]	3.30.67.30	Alpha Beta	2-Layer Sandwich	Viral Envelope Glycoprotein	domain 2	CATH (4.3.0)
G [auth I]	3.30.67.30	Alpha Beta	2-Layer Sandwich	Viral Envelope Glycoprotein	domain 2	CATH (4.3.0)
I [auth L]	3.30.70.2540	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	CRISPR-associated endoribonuclease Cas6/Csy4	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
G [auth I], H [auth J]	PF20829	Anti-CRISPR protein Acr30-35/AcrF1 (Acr30-35_AcrF1)	Anti-CRISPR protein Acr30-35/AcrF1	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H]	CRISPR-associated protein Csy3	-	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus	-
G [auth I], H [auth J]	Anti-CRISPR protein AcrF1	-	-	-
I [auth L]	CRISPR-associated endonuclease Cas6/Csy4	hydrolase activity catalytic activity endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid RNA binding binding nucleic acid binding	biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process biological process involved in interspecies interaction between organisms defense response to virus response to stimulus defense response response to other organism response to stress response to external stimulus response to external biotic stimulus response to virus response to biotic stimulus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-
J [auth M]	Pseudomonas aeruginosa strain SMC4485 CRISPR repeat sequence	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], A [auth C], B [auth D], C [auth E], D [auth F], E [auth G], F [auth H]	IPR013399	Type I-F CRISPR-associated protein Csy3	Family
G [auth I], H [auth J]	IPR049088	Anti-CRISPR protein Acr30-35/AcrF1	Family
I [auth L]	IPR013396	CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST	Family
I [auth L]	IPR042564	CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.