6BOM | pdb_00006bom

Crystal structure of mutant 2-methylcitrate synthase mcsAG306A from Aspergillus fumigatus.

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d6boma1	All alpha proteins	Citrate synthase	Citrate synthase	automated matches	automated matches	Aspergillus fumigatus (Aspergillus fumigatus A1163 ) [TaxId: 451804 ],	SCOPe (2.08)
A	d6boma2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Aspergillus fumigatus (Aspergillus fumigatus A1163 ) [TaxId: 451804 ],	SCOPe (2.08)
B	d6bomb_	All alpha proteins	Citrate synthase	Citrate synthase	automated matches	automated matches	Aspergillus fumigatus (Aspergillus fumigatus A1163 ) [TaxId: 451804 ],	SCOPe (2.08)
D	d6bomd_	All alpha proteins	Citrate synthase	Citrate synthase	automated matches	automated matches	Aspergillus fumigatus (Aspergillus fumigatus A1163 ) [TaxId: 451804 ],	SCOPe (2.08)
E	d6bome_	All alpha proteins	Citrate synthase	Citrate synthase	automated matches	automated matches	Aspergillus fumigatus (Aspergillus fumigatus A1163 ) [TaxId: 451804 ],	SCOPe (2.08)
F	d6bomf_	All alpha proteins	Citrate synthase	Citrate synthase	automated matches	automated matches	Aspergillus fumigatus (Aspergillus fumigatus A1163 ) [TaxId: 451804 ],	SCOPe (2.08)
C	d6bomc_	All alpha proteins	Citrate synthase	Citrate synthase	automated matches	automated matches	Aspergillus fumigatus (Aspergillus fumigatus A1163 ) [TaxId: 451804 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Citrate synthase	8070006	4001201	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Citrate synthase	8070007	3001050	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Citrate synthase	8070007	3001050	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Citrate synthase	8070007	3001050	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Citrate synthase	8070007	3001050	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Citrate synthase	8070007	3001050	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Citrate synthase	8070007	3001050	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Bromodomain	e6bomA1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Bromodomain	ECOD (develop294)
B	Bromodomain	e6bomB1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Bromodomain	ECOD (develop294)
D	Bromodomain	e6bomD1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Bromodomain	ECOD (develop294)
E	Bromodomain	e6bomE1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Bromodomain	ECOD (develop294)
F	Bromodomain	e6bomF1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Bromodomain	ECOD (develop294)
C	Bromodomain	e6bomC1	A: alpha bundles	X: PriB N-terminal domain-like	H: HTH	T: SH3	F: Bromodomain	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.580.10	Mainly Alpha	Orthogonal Bundle	Citrate Synthase	domain 1	CATH (4.3.0)
A	1.10.230.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450-Terp	domain 2	CATH (4.3.0)
B	1.10.580.10	Mainly Alpha	Orthogonal Bundle	Citrate Synthase	domain 1	CATH (4.3.0)
B	1.10.230.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450-Terp	domain 2	CATH (4.3.0)
D	1.10.580.10	Mainly Alpha	Orthogonal Bundle	Citrate Synthase	domain 1	CATH (4.3.0)
D	1.10.230.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450-Terp	domain 2	CATH (4.3.0)
E	1.10.580.10	Mainly Alpha	Orthogonal Bundle	Citrate Synthase	domain 1	CATH (4.3.0)
E	1.10.230.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450-Terp	domain 2	CATH (4.3.0)
F	1.10.580.10	Mainly Alpha	Orthogonal Bundle	Citrate Synthase	domain 1	CATH (4.3.0)
F	1.10.230.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450-Terp	domain 2	CATH (4.3.0)
C	1.10.580.10	Mainly Alpha	Orthogonal Bundle	Citrate Synthase	domain 1	CATH (4.3.0)
C	1.10.230.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450-Terp	domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	2-methylcitrate synthase, mitochondrial	acyltransferase activity 2-methylcitrate synthase activity acyltransferase activity, acyl groups converted into alkyl on transfer transferase activity catalytic activity citrate synthase activity identical protein binding protein binding binding	aerobic respiration cellular respiration tricarboxylic acid cycle energy derivation by oxidation of organic compounds primary metabolic process metabolic process cellular process generation of precursor metabolites and energy carbohydrate metabolic process fatty acid metabolic process short-chain fatty acid catabolic process lipid catabolic process catabolic process oxoacid metabolic process aerobic respiration cellular respiration tricarboxylic acid cycle energy derivation by oxidation of organic compounds primary metabolic process metabolic process cellular process generation of precursor metabolites and energy carbohydrate metabolic process fatty acid metabolic process short-chain fatty acid catabolic process lipid catabolic process catabolic process oxoacid metabolic process short-chain fatty acid metabolic process carboxylic acid metabolic process organic acid metabolic process organic acid catabolic process fatty acid catabolic process propionate catabolic process propionate catabolic process, 2-methylcitrate cycle monocarboxylic acid catabolic process carboxylic acid catabolic process small molecule metabolic process monocarboxylic acid metabolic process small molecule catabolic process lipid metabolic process propionate metabolic process	membrane-bounded organelle intracellular anatomical structure mitochondrion membrane-enclosed lumen intracellular membrane-bounded organelle mitochondrial matrix intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen organelle cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR036969	Citrate synthase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR019810	Citrate synthase active site	Active Site
A, B, C, D, E A, B, C, D, E, F	IPR016143	Citrate synthase-like, small alpha subdomain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR002020	Citrate synthase	Family
A, B, C, D, E A, B, C, D, E, F	IPR016142	Citrate synthase-like, large alpha subdomain	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.