6CIB | pdb_00006cib

The structure of YcaO from Methanopyrus kandleri bound with AMPPCP and Mg2+


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Fe6cibF1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
Ee6cibE1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
De6cibD1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
Ce6cibC1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
Be6cibB1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)
Ae6cibA1 A: P-loop domains-likeX: Cas7-relatedH: CRISPR-associated protein Cas7f/Csy3T: F_bP_aldolaseF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
F3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
E3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
D3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
C3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
B3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)
A3.30.160.660 Alpha Beta 2-Layer Sandwich Double Stranded RNA Binding Domain CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02624YcaO cyclodehydratase, ATP-ad Mg2+-binding (YcaO)YcaO cyclodehydratase, ATP-ad Mg2+-binding- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR003776YcaO-like domainDomain
A, B, C, D, E
IPR017667MTH_987/MJ1094Family