6DW2 | pdb_00006dw2

Structure of the 6078 Antibody Fab fragment bound to a Staphylococcus aureus wall techoic acid analog

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6dw2a2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad6dw2a1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AMyb_DNA-bindinge6dw2A1 A: alpha bundlesX: PriB N-terminal domain-likeH: ADP-ribosylationT: ADP-ribosylationF: Myb_DNA-bindingECOD (develop294)
BMyb_DNA-bindinge6dw2B1 A: alpha bundlesX: PriB N-terminal domain-likeH: ADP-ribosylationT: ADP-ribosylationF: Myb_DNA-bindingECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
B2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
Fab 6078 L-KAPPA Homo sapiens (human) IGKV1-5*03, IGKJ2*02, IGKC*01 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202610-0)
Fab 6078 VH-CH1 Homo sapiens (human) IGHV1-8*01, IGHV1-8*02, IGHV1-8*03, IGHJ2*01, IGHG1*01, IGHG1*02, IGHG1*04, IGHG1*05 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202610-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
Light ChainIGKV1 Kappa-SAbDab (2026-03-20)
Heavy ChainIGHV1 --SAbDab (2026-03-20)