6EVF
Structure of E285D S. cerevisiae Fdc1 with prFMN in the hydroxylated form
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | UbiD_2nd | e6evfA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UbiD_2nd | ECOD (1.6) |
A | UbiD_3rd | e6evfA2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: UbiD C-terminal domain-like (From Topology) | T: UbiD C-terminal domain-like | F: UbiD_3rd | ECOD (1.6) |
A | UbiD_1st | e6evfA3 | A: a+b two layers | X: N-terminal subdomain in UbiD middle domain (From Topology) | H: N-terminal subdomain in UbiD middle domain (From Topology) | T: N-terminal subdomain in UbiD middle domain | F: UbiD_1st | ECOD (1.6) |
B | UbiD_2nd | e6evfB3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UbiD_2nd | ECOD (1.6) |
B | UbiD_3rd | e6evfB2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: UbiD C-terminal domain-like (From Topology) | T: UbiD C-terminal domain-like | F: UbiD_3rd | ECOD (1.6) |
B | UbiD_1st | e6evfB1 | A: a+b two layers | X: N-terminal subdomain in UbiD middle domain (From Topology) | H: N-terminal subdomain in UbiD middle domain (From Topology) | T: N-terminal subdomain in UbiD middle domain | F: UbiD_1st | ECOD (1.6) |
C | UbiD_2nd | e6evfC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UbiD_2nd | ECOD (1.6) |
C | UbiD_3rd | e6evfC2 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: UbiD C-terminal domain-like (From Topology) | T: UbiD C-terminal domain-like | F: UbiD_3rd | ECOD (1.6) |
C | UbiD_1st | e6evfC3 | A: a+b two layers | X: N-terminal subdomain in UbiD middle domain (From Topology) | H: N-terminal subdomain in UbiD middle domain (From Topology) | T: N-terminal subdomain in UbiD middle domain | F: UbiD_1st | ECOD (1.6) |
D | UbiD_2nd | e6evfD2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel | F: UbiD_2nd | ECOD (1.6) |
D | UbiD_3rd | e6evfD1 | A: a+b two layers | X: Alpha-lytic protease prodomain-like | H: UbiD C-terminal domain-like (From Topology) | T: UbiD C-terminal domain-like | F: UbiD_3rd | ECOD (1.6) |
D | UbiD_1st | e6evfD3 | A: a+b two layers | X: N-terminal subdomain in UbiD middle domain (From Topology) | H: N-terminal subdomain in UbiD middle domain (From Topology) | T: N-terminal subdomain in UbiD middle domain | F: UbiD_1st | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.20.5.4570 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
B | 1.20.5.4570 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
C | 1.20.5.4570 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) | |
D | 1.20.5.4570 | Mainly Alpha | Up-down Bundle | Single alpha-helices involved in coiled-coils or other helix-helix interfaces | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF20695 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase N-terminal domain (UbiD_N) | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase N-terminal domain | This family has been characterised as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes [1]. This enzyme catalyses the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+ [1]. This entry repr ... | Domain | |
PF20696 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase C-terminal domain (UbiD_C) | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase C-terminal domain | This family has been characterised as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes [1]. This enzyme catalyses the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+ [1]. This entry repr ... | Domain | |
PF01977 | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Rift-related domain (UbiD) | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Rift-related domain | This family has been characterised as 3-octaprenyl-4- hydroxybenzoate carboxy-lyase enzymes [1]. This enzyme catalyses the third reaction in ubiquinone biosynthesis. For optimal activity the carboxy-lase was shown to require Mn2+ [1]. This entry repr ... | Domain |