Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 1]SCOP2B SuperfamilyRNA-binding domain, RBD 8061967 3000110 SCOP2B (2022-06-29)
J [auth C]SCOP2B SuperfamilyPre-mRNA-processing protein 45-like 8092740 3002618 SCOP2B (2022-06-29)
V [auth s]SCOP2B SuperfamilyCyclophilin-like 8065083 3000168 SCOP2B (2022-06-29)
Y [auth v]SCOP2B SuperfamilyWD40 repeat-like 8052535 3001694 SCOP2B (2022-06-29)
Y [auth v]SCOP2B SuperfamilyWD40 repeat-like 8052534 3001694 SCOP2B (2022-06-29)
Y [auth v]SCOP2B SuperfamilyWD40 repeat-like 8052534 3001694 SCOP2B (2022-06-29)
Y [auth v]SCOP2B SuperfamilyWD40 repeat-like 8051197 3001694 SCOP2B (2022-06-29)
AA [auth y]SCOP2B SuperfamilyTriquetra zinc finger motif 8051848 3002040 SCOP2B (2022-06-29)
MA [auth U]SCOP2B SuperfamilyARM repeat-like 8090869 3000116 SCOP2B (2022-06-29)
MA [auth U]SCOP2B SuperfamilyUpf1 beta-barrel domain-like 8090870 3002168 SCOP2B (2022-06-29)
MA [auth U]SCOP2B SuperfamilyRecA-like P-loop NTPases 8090872 3002019 SCOP2B (2022-06-29)
MA [auth U]SCOP2B SuperfamilyRecA-like P-loop NTPases 8090871 3002019 SCOP2B (2022-06-29)
QA [auth b]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
XA [auth i]SCOP2B SuperfamilySm-like ribonucleoproteins 8063452 3000419 SCOP2B (2022-06-29)
SA [auth d]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
ZA [auth k]SCOP2B SuperfamilySm-like ribonucleoproteins 8063468 3000419 SCOP2B (2022-06-29)
AB [auth l]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
TA [auth e]SCOP2B SuperfamilySm-like ribonucleoproteins 8041751 3000419 SCOP2B (2022-06-29)
DB [auth o]SCOP2B SuperfamilyCyclophilin-like 8035984 3000168 SCOP2B (2022-06-29)
DB [auth o]SCOP2B SuperfamilyRNA-binding domain, RBD 8039202 3000110 SCOP2B (2022-06-29)
EB [auth p]SCOP2B SuperfamilySurp module (SWAP domain) 8033803 3001401 SCOP2B (2022-06-29)
M [auth L]SCOP2B SuperfamilyHomeodomain-like 8089608 3000001 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyRNA-binding domain, RBD 8064957 3000110 SCOP2B (2022-06-29)
S [auth V]SCOP2B SuperfamilyCyclophilin-like 8033930 3000168 SCOP2B (2022-06-29)
T [auth Y]SCOP2B SuperfamilyPWI domain 8036462 3000964 SCOP2B (2022-06-29)
BA [auth z]SCOP2B SuperfamilyRNA-binding domain, RBD 8040695 3000110 SCOP2B (2022-06-29)
IB [auth N]SCOP2B SuperfamilyRNA-binding domain, RBD 8040695 3000110 SCOP2B (2022-06-29)
CA [auth 0]SCOP2 FamilyFHA domain 8100245 4002605 SCOP2 (2022-06-29)
CA [auth 0]SCOP2 SuperfamilySMAD/FHA domain-like 8100246 3000137 SCOP2 (2022-06-29)
NA [auth W]SCOP2B SuperfamilyL domain-like 8043993 3001010 SCOP2B (2022-06-29)
OA [auth X]SCOP2B SuperfamilyRNA-binding domain, RBD 8035327 3000110 SCOP2B (2022-06-29)
PA [auth a]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
WA [auth h]SCOP2B SuperfamilySm-like ribonucleoproteins 8041749 3000419 SCOP2B (2022-06-29)
RA [auth c]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
YA [auth j]SCOP2B SuperfamilySm-like ribonucleoproteins 8063476 3000419 SCOP2B (2022-06-29)
BB [auth m]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
UA [auth f]SCOP2B SuperfamilySm-like ribonucleoproteins 8041747 3000419 SCOP2B (2022-06-29)
CB [auth n]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
VA [auth g]SCOP2B SuperfamilySm-like ribonucleoproteins 8041748 3000419 SCOP2B (2022-06-29)
GB [auth r]SCOP2B SuperfamilyBrl domain-like 8036193 3000115 SCOP2B (2022-06-29)
GB [auth r]SCOP2B SuperfamilyE set domains 8055093 3000070 SCOP2B (2022-06-29)
H [auth A]SCOP2B SuperfamilyRibonuclease H-like 8041105 3000143 SCOP2B (2022-06-29)
H [auth A]SCOP2B SuperfamilyJAB1/MPN domain-like 8053277 3001105 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth 1]RRM_1_4e6ff711 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_4ECOD (1.6)
P [auth Q]G10e6ff7Q1 A: few secondary structure elementsX: Pre-mRNA-splicing factor BUD31 (From Topology)H: Pre-mRNA-splicing factor BUD31 (From Topology)T: Pre-mRNA-splicing factor BUD31F: G10ECOD (1.6)
V [auth s]Pro_isomerasee6ff7s1 A: beta barrelsX: Cyclophilin-like (From Topology)H: Cyclophilin-like (From Topology)T: Cyclophilin-likeF: Pro_isomeraseECOD (1.6)
Y [auth v]CPSF_A_Ne6ff7v3 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: CPSF_A_NECOD (1.6)
Y [auth v]MMS1_N_Ce6ff7v4 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_CECOD (1.6)
Y [auth v]MMS1_N_Ne6ff7v1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: MMS1_N_NECOD (1.6)
Y [auth v]CPSF_A_Ce6ff7v2 A: alpha arraysX: HTHH: HTHT: tri-helicalF: CPSF_A_CECOD (1.6)
Z [auth x]SF3b10e6ff7x1 A: alpha arraysX: RDS3 complex subunit 10 (From Topology)H: RDS3 complex subunit 10 (From Topology)T: RDS3 complex subunit 10F: SF3b10ECOD (1.6)
AA [auth y]PHF5e6ff7y1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: PHD finger-like domain-containing protein 5AF: PHF5ECOD (1.6)
DA [auth 9]PRP9_Ne6ff791 A: alpha bundlesX: Pre-mRNA-splicing factor PRP9 (From Topology)H: Pre-mRNA-splicing factor PRP9 (From Topology)T: Pre-mRNA-splicing factor PRP9F: PRP9_NECOD (1.6)
EA [auth F]ANAPC4_WD40_7e6ff7F1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_7ECOD (1.6)
LA [auth T]MIF4Ge6ff7T1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MIF4GECOD (1.6)
LA [auth T]MA3e6ff7T2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: MA3ECOD (1.6)
MA [auth U]Aquarius_N_2nde6ff7U3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Aquarius_N_2ndECOD (1.6)
MA [auth U]Aquarius_N_1ste6ff7U5 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Aquarius_N_1stECOD (1.6)
MA [auth U]Aquarius_N_3rde6ff7U4 A: a+b two layersX: Spliceosomal helicase Aquarius insert domain (From Topology)H: Spliceosomal helicase Aquarius insert domain (From Topology)T: Spliceosomal helicase Aquarius insert domainF: Aquarius_N_3rdECOD (1.6)
MA [auth U]AAA_11_1e6ff7U1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAA_11_1ECOD (1.6)
MA [auth U]AAA_12e6ff7U2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAA_12ECOD (1.6)
QA [auth b]LSMe6ff7b1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
XA [auth i]LSMe6ff7i1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
SA [auth d]LSMe6ff7d1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
ZA [auth k]LSMe6ff7k1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
AB [auth l]LSMe6ff7l1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
TA [auth e]LSMe6ff7e1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
DB [auth o]Pro_isomerasee6ff7o2 A: beta barrelsX: Cyclophilin-like (From Topology)H: Cyclophilin-like (From Topology)T: Cyclophilin-likeF: Pro_isomeraseECOD (1.6)
DB [auth o]RRM_1_1e6ff7o1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_1ECOD (1.6)
EB [auth p]Surpe6ff7p2 A: alpha bundlesX: Surp module (SWAP domain) (From Topology)H: Surp module (SWAP domain) (From Topology)T: Surp module (SWAP domain)F: SurpECOD (1.6)
FB [auth q]OB_NTP_binde6ff7q4 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: OB_NTP_bindECOD (1.6)
FB [auth q]HA2_N,HA2_Ce6ff7q2 A: alpha arraysX: Sec63 N-terminal subdomain-like (From Topology)H: Sec63 N-terminal subdomain-like (From Topology)T: Sec63 N-terminal subdomain-likeF: HA2_N,HA2_CECOD (1.6)
FB [auth q]Helicase_C_7e6ff7q1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Helicase_C_7ECOD (1.6)
FB [auth q]DEAD_3e6ff7q3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DEAD_3ECOD (1.6)
HB [auth w]Isy1e6ff7w1 A: alpha bundlesX: Long alpha-hairpinH: ISY1 N-terminal domain-like (From Topology)T: ISY1 N-terminal domain-likeF: Isy1ECOD (1.6)
K [auth D]ANAPC4_WD40_11e6ff7D1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_11ECOD (1.6)
M [auth L]Myb_DNA-binding_1e6ff7L1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Myb_DNA-binding_1ECOD (1.6)
N [auth O]TPR_11_6e6ff7O1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: TPR_11_6ECOD (1.6)
O [auth P]RRM_1_6e6ff7P3 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_6ECOD (1.6)
O [auth P]KOG0153e6ff7P2 A: few secondary structure elementsX: RING/U-box-likeH: RING/U-box-likeT: FYVE/PHD zinc fingerF: KOG0153ECOD (1.6)
O [auth P]Toruse6ff7P1 A: few secondary structure elementsX: CCCH zinc fingerH: CCCH zinc finger (From Topology)T: CCCH zinc fingerF: TorusECOD (1.6)
S [auth V]Pro_isomerasee6ff7V1 A: beta barrelsX: Cyclophilin-like (From Topology)H: Cyclophilin-like (From Topology)T: Cyclophilin-likeF: Pro_isomeraseECOD (1.6)
T [auth Y]PWIe6ff7Y1 A: alpha arraysX: PWI domain-likeH: PWI domain (From Topology)T: PWI domainF: PWIECOD (1.6)
X [auth u]KOG0213e6ff7u1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: KOG0213ECOD (1.6)
BA [auth z]RRM_1_2e6ff7z1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_2ECOD (1.6)
IB [auth N]RRM_1_2e6ff7N1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_2ECOD (1.6)
NA [auth W]LRR_9e6ff7W1 A: beta duplicates or obligate multimersX: Single-stranded right-handed beta-helixH: Leucine-rich repeats (From Topology)T: Leucine-rich repeatsF: LRR_9ECOD (1.6)
OA [auth X]RRM_1_1e6ff7X2 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_1ECOD (1.6)
OA [auth X]RRM_1_2e6ff7X1 A: a+b two layersX: Alpha-beta plaitsH: RNA-binding domain, RBD (From Topology)T: RNA-binding domain, RBDF: RRM_1_2ECOD (1.6)
PA [auth a]LSMe6ff7a1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
WA [auth h]LSMe6ff7h1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
RA [auth c]LSMe6ff7c1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
YA [auth j]LSMe6ff7j1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
BB [auth m]LSMe6ff7m1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
UA [auth f]LSMe6ff7f1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
CB [auth n]LSMe6ff7n1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
VA [auth g]LSMe6ff7g1 A: beta barrelsX: SH3H: SH3T: SH3F: LSMECOD (1.6)
GB [auth r]Sec63_3rde6ff7r8 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Sec63_3rdECOD (1.6)
GB [auth r]KOG0952e6ff7r12 A: alpha arraysX: HTHH: HTHT: wingedF: KOG0952ECOD (1.6)
GB [auth r]Sec63_2nd_1e6ff7r2 A: alpha arraysX: HhH/H2THH: SAM-like subdomain in Sec63-like proteins (From Topology)T: SAM-like subdomain in Sec63-like proteinsF: Sec63_2nd_1ECOD (1.6)
GB [auth r]Sec63_2nde6ff7r10 A: alpha arraysX: HhH/H2THH: SAM-like subdomain in Sec63-like proteins (From Topology)T: SAM-like subdomain in Sec63-like proteinsF: Sec63_2ndECOD (1.6)
GB [auth r]Sec63_1ste6ff7r5 A: alpha arraysX: Sec63 N-terminal subdomain-like (From Topology)H: Sec63 N-terminal subdomain-like (From Topology)T: Sec63 N-terminal subdomain-likeF: Sec63_1stECOD (1.6)
GB [auth r]DEAD_1e6ff7r1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DEAD_1ECOD (1.6)
GB [auth r]Helicase_C_5e6ff7r3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Helicase_C_5ECOD (1.6)
GB [auth r]DEAD_1,KOG0951_2nde6ff7r7 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: DEAD_1,KOG0951_2ndECOD (1.6)
F [auth 7]zf-met_1e6ff771 A: few secondary structure elementsX: beta-beta-alpha zinc fingersH: beta-beta-alpha zinc fingers (From Topology)T: beta-beta-alpha zinc fingersF: zf-met_1ECOD (1.6)
H [auth A]U5_2-snRNA_bdge6ff7A6 A: alpha bundlesX: helical bundle domain in reverse transcriptase-like polymerases (From Topology)H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)T: helical bundle domain in reverse transcriptase-like polymerasesF: U5_2-snRNA_bdgECOD (1.6)
H [auth A]PROCN_C,PROCN_Ne6ff7A4 A: alpha complex topologyX: Pre-mRNA-splicing factor 8 N-terminal domain (From Topology)H: Pre-mRNA-splicing factor 8 N-terminal domain (From Topology)T: Pre-mRNA-splicing factor 8 N-terminal domainF: PROCN_C,PROCN_NECOD (1.6)
H [auth A]RRM_4e6ff7A3 A: a+b two layersX: Alpha-beta plaitsH: Adenylyl and guanylyl cyclase catalytic domain-likeT: Adenylyl and guanylyl cyclase catalytic domain-likeF: RRM_4ECOD (1.6)
H [auth A]PROCTe6ff7A5 A: a+b three layersX: Cytidine deaminase-like (From Topology)H: Cytidine deaminase-like (From Topology)T: Cytidine deaminase-likeF: PROCTECOD (1.6)
H [auth A]U6-snRNA_bdge6ff7A2 A: a/b three-layered sandwichesX: Restriction endonuclease-likeH: Restriction endonuclease-like (From Topology)T: Restriction endonuclease-likeF: U6-snRNA_bdgECOD (1.6)
H [auth A]PRP8_domainIVe6ff7A1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PRP8_domainIVECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 1]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
I [auth B]PF00679Elongation factor G C-terminus (EFG_C)Elongation factor G C-terminusThis domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.Domain
I [auth B]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
I [auth B]PF14492Elongation Factor G, domain III (EFG_III)Elongation Factor G, domain IIIThis domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1].Domain
I [auth B]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
I [auth B]PF03764Elongation factor G, domain IV (EFG_IV)Elongation factor G, domain IVThis domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold.Domain
I [auth B]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
J [auth C]PF02731SKIP/SNW domain (SKIP_SNW)SKIP/SNW domain- Family
J [auth C]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
DA [auth 9]PF16837Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 (SF3A3)Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9SF3A3 is one of the components of the SF3a splicing factor complex of the mature U2 snRNP (small nuclear ribonucleoprotein particle). In yeast, SF3a shows a bifurcated assembly structure of three subunits, Prp9 (subunit 3), Prp11 (subunit 2) and Prp2 ...SF3A3 is one of the components of the SF3a splicing factor complex of the mature U2 snRNP (small nuclear ribonucleoprotein particle). In yeast, SF3a shows a bifurcated assembly structure of three subunits, Prp9 (subunit 3), Prp11 (subunit 2) and Prp21 (subunit 1). Prp9 and Prp21 were not thought to interact with each other but the alpha1 helix of Prp9 does make important contacts with the SURP2 domain of Prp21, thus the two do interact via a bidentate-binding mode. Prp9 harbours a major binding site for stem-loop IIa of U2 snRNA [1].
Domain
DA [auth 9]PF13297Replication stress response SDE2 C-terminal (SDE2_2C)Replication stress response SDE2 C-terminalThis domain represents the C-terminal region of the Replication stress response SDE2, a genome surveillance factor. It contains the DNA-binding SAP domain, frequently found in proteins involved in DNA repair. SDE2 C-terminal domain must be cleaved fr ...This domain represents the C-terminal region of the Replication stress response SDE2, a genome surveillance factor. It contains the DNA-binding SAP domain, frequently found in proteins involved in DNA repair. SDE2 C-terminal domain must be cleaved from its N-terminal at a diglycine motif within the ubiquitin-like fold, after Proliferating cell nuclear antigen (PCNA) interaction. This generates a functional protein that negatively regulates damage-inducible PCNA monoubiquitination, which then is proteolytically degraded to allow S phase progression and replication fork recovery in response to DNA damage [1].
Domain
DA [auth 9]PF12108Splicing factor SF3a60 binding domain (SF3a60_bindingd)Splicing factor SF3a60 binding domainThis domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is th ...This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription.
Domain
EA [auth F]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
EA [auth F]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
KA [auth M]PF13181Tetratricopeptide repeat (TPR_8)Tetratricopeptide repeat- Repeat
KA [auth M]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
LA [auth T]PF02847MA3 domain (MA3)MA3 domain- Repeat
LA [auth T]PF00642Zinc finger C-x8-C-x5-C-x3-H type (and similar) (zf-CCCH)Zinc finger C-x8-C-x5-C-x3-H type (and similar)- Family
LA [auth T]PF02854MIF4G domain (MIF4G)MIF4G domain- Repeat
MA [auth U]PF21144Intron-binding protein aquarius insert domain (Aquarius_N_3rd)Intron-binding protein aquarius insert domainThis entry represents the insert domain of intron-binding protein aquarius, a splicing factor which links excision of introns from pre-mRNA with snoRP assembly [1,2].Domain
MA [auth U]PF21143Intron-binding protein aquarius, beta-barrel (Aquarius_N_2nd)Intron-binding protein aquarius, beta-barrelThis entry represents the beta-barrel domain found at the N-terminal of intron-binding protein aquarius, a splicing factor which links excision of introns from pre-mRNA with snoRP assembly [1,2].Domain
MA [auth U]PF13086AAA domain (AAA_11)AAA domainThis family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.Domain
MA [auth U]PF13087AAA domain (AAA_12)AAA domainThis family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.Domain
MA [auth U]PF16399Intron-binding protein aquarius N-terminal (Aquarius_N_1st)Intron-binding protein aquarius N-terminal- Repeat
MA [auth U]PF22646PPP2R1A-like HEAT repeat (PPP2R1A-like_HEAT)PPP2R1A-like HEAT repeat- Repeat
K [auth D]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
K [auth D]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
L [auth E]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
M [auth L]PF13921Myb-like DNA-binding domain (Myb_DNA-bind_6)Myb-like DNA-binding domainThis family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].Domain
M [auth L]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
N [auth O]PF02184HAT (Half-A-TPR) repeat (HAT)HAT (Half-A-TPR) repeat- Repeat
N [auth O]PF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLDThe peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
Domain
N [auth O]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
O [auth P]PF12230Pre-mRNA splicing factor PRP21 like protein (PRP21_like_P)Pre-mRNA splicing factor PRP21 like protein- Family
O [auth P]PF01805Surp module (Surp)Surp module- Family
O [auth P]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
O [auth P]PF21369STL11, N-terminal (STL11_N)STL11, N-terminalThis entry represents the N-terminal domain of STL11 from yeast and its homologues [1-4], such as RBM22 from human. This domain comprises a zinc finger, FYVE/PHD type. Members of this entry are involved in pre-mRNA splicing.Domain
R [auth S]PF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLDThe peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
Domain
S [auth V]PF10433RSE1/DDB1/CPSF1 first beta-propeller (Beta-prop_RSE1_1st)Mono-functional DNA-alkylating methyl methanesulfonate N-term- Repeat
S [auth V]PF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLDThe peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
Domain
T [auth Y]PF01480PWI domain (PWI)PWI domain- Family
U [auth Z]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
BA [auth z],
IB [auth N]
PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
BA [auth z],
IB [auth N]
PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
CA [auth 0]PF00498FHA domain (FHA)FHA domain- Family
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J]
PF08606Prp19/Pso4-like (Prp19)Prp19/Pso4-likeThis regions is found specifically in PRP19-like protein. The region represented by this family covers the sequence implicated in self-interaction and a coiled-coiled motif [1]. PRP19-like proteins form an oligomer that is necessary ...This regions is found specifically in PRP19-like protein. The region represented by this family covers the sequence implicated in self-interaction and a coiled-coiled motif [1]. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [1].
Domain
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J]
PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
JA [auth K]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
OA [auth X]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
F [auth 7]PF12874Zinc-finger of C2H2 type (zf-met)Zinc-finger of C2H2 typeThis is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.Domain
G [auth 8]PF04037Domain of unknown function (DUF382) (DUF382)Domain of unknown function (DUF382)- Family
H [auth A]PF10597U5-snRNA binding site 2 of PrP8 (U5_2-snRNA_bdg)U5-snRNA binding site 2 of PrP8The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis [1]. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that ...The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis [1]. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor [2].
Domain
H [auth A]PF10598RNA recognition motif of the spliceosomal PrP8 (RRM_4)RNA recognition motif of the spliceosomal PrP8The large RNA-protein complex of the spliceosome catalyses pre-mRNA splicing. One of the most conserved core proteins is PrP8 which occupies a central position in the catalytic core of the spliceosome, and has been implicated in several crucial molec ...The large RNA-protein complex of the spliceosome catalyses pre-mRNA splicing. One of the most conserved core proteins is PrP8 which occupies a central position in the catalytic core of the spliceosome, and has been implicated in several crucial molecular rearrangements that occur there, and has recently come under the spotlight for its role in the inherited human disease, Retinitis Pigmentosa [1]. The RNA-recognition motif of PrP8 is highly conserved and provides a possible RNA binding centre for the 5-prime SS, BP, or 3-prime SS of pre-mRNA which are known to contact with Prp8. The most conserved regions of an RRM are defined as the RNP1 and RNP2 sequences. Recognition of RNA targets can also be modulated by a number of other factors, most notably the two loops beta1-alpha1, beta2-beta3 and the amino acid residues C-terminal to the RNP2 domain [2].
Domain
H [auth A]PF10596U6-snRNA interacting domain of PrP8 (U6-snRNA_bdg)U6-snRNA interacting domain of PrP8This domain incorporates the interacting site for the U6-snRNA as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, and is the prime candidate for the role of cofactor for the spliceosome's RNA core. The essential spliceosomal protein Prp8 ...This domain incorporates the interacting site for the U6-snRNA as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, and is the prime candidate for the role of cofactor for the spliceosome's RNA core. The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor [1].
Domain
H [auth A]PF12134PRP8 domain IV core (PRP8_domainIV)PRP8 domain IV coreThis domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The dom ...This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. The function of PRP8 domain IV is believed to be interaction with the splicosomal core.
Domain
H [auth A]PF08082PRO8NT (NUC069), PrP8 N-terminal domain (PRO8NT)PRO8NT (NUC069), PrP8 N-terminal domainThe PRO8NT domain is found at the N-terminus of pre-mRNA splicing factors of PRO8 family [1]. The NLS or nuclear localisation signal for these spliceosome proteins begins at the start and runs for 60 residues. N-terminal to this domain is a highly va ...The PRO8NT domain is found at the N-terminus of pre-mRNA splicing factors of PRO8 family [1]. The NLS or nuclear localisation signal for these spliceosome proteins begins at the start and runs for 60 residues. N-terminal to this domain is a highly variable proline-rich region [4].
Domain
H [auth A]PF08083PROCN (NUC071) domain (PROCN)PROCN (NUC071) domainThe PROCN domain is the central domain in pre-mRNA splicing factors of PRO8 family [1].Domain
H [auth A]PF08084PROCT (NUC072) domain (PROCT)PROCT (NUC072) domainThe PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [1].Domain
H [auth A]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin protease- Family
H [auth A]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 1]RNA-binding motif protein, X-linked 2
B [auth 2]U2 snRNA---
D [auth 5]U5 snRNA---
I [auth B]116 kDa U5 small nuclear ribonucleoprotein component
J [auth C]SNW domain-containing protein 1
P [auth Q]Protein BUD31 homolog
V [auth s]Peptidyl-prolyl cis-trans isomerase CWC27 homolog-
Y [auth v]Splicing factor 3B subunit 3
Z [auth x]Splicing factor 3B subunit 5
AA [auth y]PHD finger-like domain-containing protein 5A
DA [auth 9]Splicing factor 3A subunit 3
EA [auth F]U5 small nuclear ribonucleoprotein 40 kDa protein
KA [auth M]Pre-mRNA-splicing factor SYF1-
LA [auth T]Pre-mRNA-splicing factor CWC22 homolog
MA [auth U]Intron-binding protein aquarius
QA [auth b],
XA [auth i]
Small nuclear ribonucleoprotein F
SA [auth d],
ZA [auth k]
Small nuclear ribonucleoprotein G
AB [auth l],
TA [auth e]
Small nuclear ribonucleoprotein Sm D3
DB [auth o]Peptidyl-prolyl cis-trans isomerase E
EB [auth p]Splicing factor 3A subunit 1
FB [auth q]Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
HB [auth w]Pre-mRNA-splicing factor ISY1 homolog
K [auth D]Pleiotropic regulator 1-
L [auth E]Pre-mRNA-processing factor 17
M [auth L]Cell division cycle 5-like protein
N [auth O]Crooked neck-like protein 1
O [auth P]Pre-mRNA-splicing factor RBM22
Q [auth R]Spliceosome-associated protein CWC15 homolog
R [auth S]Serine/arginine repetitive matrix protein 2
S [auth V]Peptidyl-prolyl cis-trans isomerase-like 1
T [auth Y]Serine/arginine repetitive matrix protein 1
U [auth Z]pre-mRNA---
W [auth t]RING finger protein 113A
X [auth u]Splicing factor 3B subunit 1
BA [auth z],
IB [auth N]
Splicing factor 3B subunit 6
CA [auth 0]Smad nuclear-interacting protein 1
C [auth 3]BUD13 homolog
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J]
Pre-mRNA-processing factor 19
JA [auth K]Pre-mRNA-splicing factor SPF27-
NA [auth W]U2 small nuclear ribonucleoprotein A'
OA [auth X]U2 small nuclear ribonucleoprotein B''
PA [auth a],
WA [auth h]
Small nuclear ribonucleoprotein Sm D2
RA [auth c],
YA [auth j]
Small nuclear ribonucleoprotein E
BB [auth m],
UA [auth f]
Small nuclear ribonucleoprotein-associated proteins B and B'
CB [auth n],
VA [auth g]
Small nuclear ribonucleoprotein Sm D1
GB [auth r]U5 small nuclear ribonucleoprotein 200 kDa helicase
E [auth 6]U6 snRNA---
F [auth 7]Splicing factor 3A subunit 2
G [auth 8]Splicing factor 3B subunit 2
H [auth A]Pre-mRNA-processing-splicing factor 8

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 1]IPR051847RNA Processing and Spliceosome ComponentFamily
A [auth 1]IPR000504RNA recognition motif domainDomain
A [auth 1]IPR045844Ist3-like, RNA recognition motifDomain
A [auth 1]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
A [auth 1]IPR035979RNA-binding domain superfamilyHomologous Superfamily
I [auth B]IPR005517Translation elongation factor EFG/EF2, domain IVDomain
I [auth B]IPR000795Translational (tr)-type GTP-binding domainDomain
I [auth B]IPR035647EF-G domain III/V-likeHomologous Superfamily
I [auth B]IPR035655116kDa U5 small nuclear ribonucleoprotein component, C-terminalDomain
I [auth B]IPR041095Elongation Factor G, domain IIDomain
I [auth B]IPR004161Translation elongation factor EFTu-like, domain 2Domain
I [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
I [auth B]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
I [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
I [auth B]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
I [auth B]IPR031950116kDa U5 small nuclear ribonucleoprotein component, N-terminalDomain
I [auth B]IPR005225Small GTP-binding domainDomain
I [auth B]IPR000640Elongation factor EFG, domain V-likeDomain
I [auth B]IPR044121Snu114, GTP-binding domainDomain
J [auth C]IPR017862SKI-interacting protein, SKIPFamily
J [auth C]IPR004015SKI-interacting protein SKIP, SNW domainDomain
P [auth Q]IPR001748Pre-mRNA-splicing factor BUD31Family
P [auth Q]IPR018230BUD31/G10-related, conserved siteConserved Site
V [auth s]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
V [auth s]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
V [auth s]IPR044666Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-likeFamily
V [auth s]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
Y [auth v]IPR018846RSE1/DDB1/CPSF1, first beta-propeller domainDomain
Y [auth v]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Y [auth v]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Y [auth v]IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalDomain
Y [auth v]IPR050358RSE1/DDB1/CFT1/CPSF1Family
Z [auth x]IPR017089Splicing factor 3B, subunit 5Family
Z [auth x]IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10Family
AA [auth y]IPR005345PHF5-likeFamily
DA [auth 9]IPR021966Splicing factor SF3a60 binding domainDomain
DA [auth 9]IPR031774SF3A3 domainDomain
DA [auth 9]IPR024598Splicing factor SF3a60 /Prp9 subunit, C-terminalDomain
DA [auth 9]IPR025086SDE2/SF3A3, SAP domainDomain
DA [auth 9]IPR000690Matrin/U1-C, C2H2-type zinc fingerDomain
DA [auth 9]IPR051421RNA Processing and DNA Damage Response RegulatorFamily
EA [auth F]IPR052234U5 snRNP Complex ComponentFamily
EA [auth F]IPR019775WD40 repeat, conserved siteConserved Site
EA [auth F]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
EA [auth F]IPR001680WD40 repeatRepeat
EA [auth F]IPR020472G-protein beta WD-40 repeatRepeat
EA [auth F]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
KA [auth M]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
KA [auth M]IPR003107HAT (Half-A-TPR) repeatRepeat
KA [auth M]IPR045075Pre-mRNA-splicing factor Syf1-likeFamily
KA [auth M]IPR019734Tetratricopeptide repeatRepeat
LA [auth T]IPR050781Pre-mRNA-splicing factor CWC22Family
LA [auth T]IPR016024Armadillo-type foldHomologous Superfamily
LA [auth T]IPR003891Initiation factor eIF-4 gamma, MA3Domain
LA [auth T]IPR003890MIF4G-like, type 3Domain
MA [auth U]IPR048966RNA helicase aquarius, beta-barrelDomain
MA [auth U]IPR048967RNA helicase aquarius, insertion domainDomain
MA [auth U]IPR041677DNA2/NAM7 helicase, helicase domainDomain
MA [auth U]IPR026300CWF11 familyFamily
MA [auth U]IPR045055DNA2/NAM7-like helicaseFamily
MA [auth U]IPR032174RNA helicase aquarius, N-terminal domainDomain
MA [auth U]IPR041679DNA2/NAM7 helicase-like, C-terminalDomain
MA [auth U]IPR047187Upf1-like, C-terminal helicase domainDomain
MA [auth U]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
QA [auth b],
XA [auth i]
IPR016487Sm-like protein Lsm6/SmFFamily
QA [auth b],
XA [auth i]
IPR034100Small nuclear ribonucleoprotein FFamily
QA [auth b],
XA [auth i]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
QA [auth b],
XA [auth i]
IPR047575Sm domainDomain
QA [auth b],
XA [auth i]
IPR010920LSM domain superfamilyHomologous Superfamily
SA [auth d],
ZA [auth k]
IPR044641Sm-like protein Lsm7/SmGFamily
SA [auth d],
ZA [auth k]
IPR034098Small nuclear ribonucleoprotein GFamily
SA [auth d],
ZA [auth k]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
SA [auth d],
ZA [auth k]
IPR047575Sm domainDomain
SA [auth d],
ZA [auth k]
IPR010920LSM domain superfamilyHomologous Superfamily
AB [auth l],
TA [auth e]
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
AB [auth l],
TA [auth e]
IPR034099Small nuclear ribonucleoprotein Sm D3Family
AB [auth l],
TA [auth e]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
AB [auth l],
TA [auth e]
IPR047575Sm domainDomain
AB [auth l],
TA [auth e]
IPR010920LSM domain superfamilyHomologous Superfamily
DB [auth o]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
DB [auth o]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
DB [auth o]IPR034168Peptidyl-prolyl cis-trans isomerase E, RNA recognition motifDomain
DB [auth o]IPR016304Peptidyl-prolyl cis-trans isomerase EFamily
DB [auth o]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
DB [auth o]IPR000504RNA recognition motif domainDomain
DB [auth o]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
DB [auth o]IPR035979RNA-binding domain superfamilyHomologous Superfamily
EB [auth p]IPR045146Splicing factor 3A subunit 1Family
EB [auth p]IPR035967SWAP/Surp superfamilyHomologous Superfamily
EB [auth p]IPR000061SWAP/SurpDomain
EB [auth p]IPR000626Ubiquitin-like domainDomain
EB [auth p]IPR035563Splicing factor 3A subunit 1, ubiquitin domainDomain
EB [auth p]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
EB [auth p]IPR022030Splicing factor 3A subunit 1, conserved domainDomain
FB [auth q]IPR011709DEAD-box helicase, OB foldDomain
FB [auth q]IPR001650Helicase, C-terminal domain-likeDomain
FB [auth q]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
FB [auth q]IPR048333Helicase associated domain (HA2), winged-helix domainDomain
FB [auth q]IPR002464DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved siteConserved Site
FB [auth q]IPR007502Helicase-associated domainDomain
FB [auth q]IPR011545DEAD/DEAH box helicase domainDomain
FB [auth q]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
HB [auth w]IPR029012Helix hairpin bin domain superfamilyHomologous Superfamily
HB [auth w]IPR009360Pre-mRNA-splicing factor Isy1Family
HB [auth w]IPR037200Pre-mRNA-splicing factor Isy1 superfamilyHomologous Superfamily
K [auth D]IPR019775WD40 repeat, conserved siteConserved Site
K [auth D]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
K [auth D]IPR045241WD repeat Prp46/PLRG1-likeFamily
K [auth D]IPR001680WD40 repeatRepeat
K [auth D]IPR020472G-protein beta WD-40 repeatRepeat
K [auth D]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
L [auth E]IPR019775WD40 repeat, conserved siteConserved Site
L [auth E]IPR032847Pre-mRNA-processing factor 17Family
L [auth E]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
L [auth E]IPR001680WD40 repeatRepeat
L [auth E]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
M [auth L]IPR047240Pre-mRNA splicing factor component CDC5L/Cef1, second SANT/myb-like domainDomain
M [auth L]IPR017930Myb domainDomain
M [auth L]IPR047242Pre-mRNA splicing factor component CDC5L/Cef1Family
M [auth L]IPR009057Homedomain-like superfamilyHomologous Superfamily
M [auth L]IPR001005SANT/Myb domainDomain
M [auth L]IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1, C-terminalDomain
N [auth O]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
N [auth O]IPR003107HAT (Half-A-TPR) repeatRepeat
N [auth O]IPR045075Pre-mRNA-splicing factor Syf1-likeFamily
O [auth P]IPR036855Zinc finger, CCCH-type superfamilyHomologous Superfamily
O [auth P]IPR039171Pre-mRNA-splicing factor Cwc2/Slt11Family
O [auth P]IPR000504RNA recognition motif domainDomain
O [auth P]IPR000571Zinc finger, CCCH-typeDomain
O [auth P]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
O [auth P]IPR048995STL11/RBM22-like, N-terminal domainDomain
O [auth P]IPR035979RNA-binding domain superfamilyHomologous Superfamily
Q [auth R]IPR006973Pre-mRNA-splicing factor Cwf15/Cwc15Family
R [auth S]IPR047490Serine/arginine repetitive matrix protein 2, cwf21 domainDomain
R [auth S]IPR013170mRNA splicing factor Cwf21 domainDomain
R [auth S]IPR024945Spt5 C-terminal domainDomain
R [auth S]IPR051372Pre-mRNA-splicing factor CWC21Family
S [auth V]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
S [auth V]IPR024936Cyclophilin-type peptidyl-prolyl cis-trans isomeraseFamily
S [auth V]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
S [auth V]IPR044666Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-likeFamily
S [auth V]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
T [auth Y]IPR052225Serine/arginine repetitive matrixFamily
T [auth Y]IPR002483PWI domainDomain
T [auth Y]IPR036483PWI domain superfamilyHomologous Superfamily
W [auth t]IPR017907Zinc finger, RING-type, conserved siteConserved Site
W [auth t]IPR000571Zinc finger, CCCH-typeDomain
W [auth t]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
W [auth t]IPR036855Zinc finger, CCCH-type superfamilyHomologous Superfamily
W [auth t]IPR001841Zinc finger, RING-typeDomain
W [auth t]IPR039971Pre-mRNA-splicing factor CWC24-likeFamily
X [auth u]IPR054573Phosphatase PP2A regulatory subunit A/Splicing factor 3B subunit 1-like, HEAT repeatDomain
X [auth u]IPR016024Armadillo-type foldHomologous Superfamily
X [auth u]IPR011989Armadillo-like helicalHomologous Superfamily
X [auth u]IPR015016Splicing factor 3B subunit 1Domain
X [auth u]IPR038737Splicing factor 3B subunit 1-likeFamily
BA [auth z],
IB [auth N]
IPR000504RNA recognition motif domainDomain
BA [auth z],
IB [auth N]
IPR050374RRT5/SRSF/Splicing Factor SRFamily
BA [auth z],
IB [auth N]
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
BA [auth z],
IB [auth N]
IPR034150SF3B6, RNA recognition motifDomain
BA [auth z],
IB [auth N]
IPR035979RNA-binding domain superfamilyHomologous Superfamily
CA [auth 0]IPR008984SMAD/FHA domain superfamilyHomologous Superfamily
CA [auth 0]IPR000253Forkhead-associated (FHA) domainDomain
CA [auth 0]IPR050923Cellular Process Regulator and RNA Processing ProteinFamily
C [auth 3]IPR051112Pre-mRNA-splicing factor CWC26Family
C [auth 3]IPR018609Bud13Family
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J]
IPR019775WD40 repeat, conserved siteConserved Site
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J]
IPR013915Pre-mRNA-splicing factor 19, coiled-coil regionDomain
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J]
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J]
IPR038959Pre-mRNA-processing factor 19Family
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J]
IPR003613U-box domainDomain
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J]
IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J]
IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J]
IPR001680WD40 repeatRepeat
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J]
IPR020472G-protein beta WD-40 repeatRepeat
JA [auth K]IPR008409Pre-mRNA-splicing factor SPF27Family
NA [auth W]IPR001611Leucine-rich repeatRepeat
NA [auth W]IPR003603U2A'/phosphoprotein 32 family A, C-terminalDomain
NA [auth W]IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
OA [auth X]IPR034562U2 small nuclear ribonucleoprotein B'', RNA recognition motif 2Domain
OA [auth X]IPR000504RNA recognition motif domainDomain
OA [auth X]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
OA [auth X]IPR035979RNA-binding domain superfamilyHomologous Superfamily
OA [auth X]IPR034564U2 small nuclear ribonucleoprotein B'', RNA recognition motif 1Domain
PA [auth a],
WA [auth h]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
PA [auth a],
WA [auth h]
IPR047575Sm domainDomain
PA [auth a],
WA [auth h]
IPR027248Small nuclear ribonucleoprotein Sm D2Family
PA [auth a],
WA [auth h]
IPR010920LSM domain superfamilyHomologous Superfamily
RA [auth c],
YA [auth j]
IPR027078Small nuclear ribonucleoprotein EFamily
RA [auth c],
YA [auth j]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
RA [auth c],
YA [auth j]
IPR047575Sm domainDomain
RA [auth c],
YA [auth j]
IPR010920LSM domain superfamilyHomologous Superfamily
BB [auth m],
UA [auth f]
IPR050914Small nuclear ribonucleoprotein-associated SmB/NAA38-likeFamily
BB [auth m],
UA [auth f]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
BB [auth m],
UA [auth f]
IPR017131Small ribonucleoprotein associated, SmB/SmNFamily
BB [auth m],
UA [auth f]
IPR047575Sm domainDomain
BB [auth m],
UA [auth f]
IPR010920LSM domain superfamilyHomologous Superfamily
CB [auth n],
VA [auth g]
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
CB [auth n],
VA [auth g]
IPR034102Small nuclear ribonucleoprotein D1Domain
CB [auth n],
VA [auth g]
IPR001163Sm domain, eukaryotic/archaea-typeDomain
CB [auth n],
VA [auth g]
IPR047575Sm domainDomain
CB [auth n],
VA [auth g]
IPR010920LSM domain superfamilyHomologous Superfamily
GB [auth r]IPR048863Pre-mRNA-splicing helicase BRR2-like, plug domainDomain
GB [auth r]IPR041094Brr2, N-terminal helicase PWI domainDomain
GB [auth r]IPR004179Sec63 domainDomain
GB [auth r]IPR014756Immunoglobulin E-setHomologous Superfamily
GB [auth r]IPR011545DEAD/DEAH box helicase domainDomain
GB [auth r]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
GB [auth r]IPR050474Helicase Hel308/SKI2-likeFamily
GB [auth r]IPR001650Helicase, C-terminal domain-likeDomain
GB [auth r]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
GB [auth r]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
GB [auth r]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
GB [auth r]IPR035892C2 domain superfamilyHomologous Superfamily
F [auth 7]IPR031781SF3A2 domainDomain
F [auth 7]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
F [auth 7]IPR013087Zinc finger C2H2-typeDomain
F [auth 7]IPR052092Splicing Factor 3A Subunit 2Family
F [auth 7]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
F [auth 7]IPR000690Matrin/U1-C, C2H2-type zinc fingerDomain
G [auth 8]IPR006568PSP, proline-richDomain
G [auth 8]IPR007180Domain of unknown function DUF382Domain
G [auth 8]IPR003034SAP domainDomain
G [auth 8]IPR052584Pre-mRNA Spliceosomal U2 snRNP Complex ComponentFamily
H [auth A]IPR012984PROCT domainDomain
H [auth A]IPR012591PRO8NT domainDomain
H [auth A]IPR019580Pre-mRNA-processing-splicing factor 8, U6-snRNA-bindingDomain
H [auth A]IPR027652Pre-mRNA-processing-splicing factor 8Family
H [auth A]IPR043172Prp8 RNase domain IV, palm regionHomologous Superfamily
H [auth A]IPR012592PROCN domainDomain
H [auth A]IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
H [auth A]IPR043173Prp8 RNase domain IV, fingers regionHomologous Superfamily
H [auth A]IPR021983PRP8 domain IV coreDomain
H [auth A]IPR019581Pre-mRNA-processing-splicing factor 8, U5-snRNA-bindingDomain
H [auth A]IPR037518MPN domainDomain
H [auth A]IPR019582RNA recognition motif, spliceosomal PrP8Domain
H [auth A]IPR042516Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamilyHomologous Superfamily
H [auth A]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I [auth B]PharosQ15029
J [auth C]PharosQ13573
P [auth Q]PharosP41223
V [auth s]PharosQ6UX04
Y [auth v]PharosQ15393
Z [auth x]PharosQ9BWJ5
AA [auth y]PharosQ7RTV0
DA [auth 9]PharosQ12874
EA [auth F]PharosQ96DI7
KA [auth M]PharosQ9HCS7
LA [auth T]PharosQ9HCG8
MA [auth U]PharosO60306
QA [auth b],
XA [auth i]
PharosP62306
SA [auth d],
ZA [auth k]
PharosP62308
AB [auth l],
TA [auth e]
PharosP62318
DB [auth o]PharosQ9UNP9
EB [auth p]PharosQ15459
FB [auth q]PharosO60231
K [auth D]PharosO43660
L [auth E]PharosO60508
M [auth L]PharosQ99459
N [auth O]PharosQ9BZJ0
O [auth P]PharosQ9NW64
Q [auth R]PharosQ9P013
R [auth S]PharosQ9UQ35
S [auth V]PharosQ9Y3C6
T [auth Y]PharosQ8IYB3
W [auth t]PharosO15541
X [auth u]PharosO75533
BA [auth z],
IB [auth N]
PharosQ9Y3B4
CA [auth 0]PharosQ8TAD8
C [auth 3]PharosQ9BRD0
FA [auth G],
GA [auth H],
HA [auth I],
IA [auth J]
PharosQ9UMS4
JA [auth K]PharosO75934
OA [auth X]PharosP08579
PA [auth a],
WA [auth h]
PharosP62316
RA [auth c],
YA [auth j]
PharosP62304
BB [auth m],
UA [auth f]
PharosP14678
CB [auth n],
VA [auth g]
PharosP62314
GB [auth r]PharosO75643
F [auth 7]PharosQ15428
G [auth 8]PharosQ13435
H [auth A]PharosQ6P2Q9