Cryo-EM structure of a late human pre-40S ribosomal subunit - State B
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| I [auth e] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053453 | 3002190 | SCOP2B (2022-06-29) |
| H [auth E] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052755 | 3001473 | SCOP2B (2022-06-29) |
| H [auth E] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052756 | 3000135 | SCOP2B (2022-06-29) |
| H [auth E] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052757 | 3000334 | SCOP2B (2022-06-29) |
| G [auth c] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8063426 | 3000135 | SCOP2B (2022-06-29) |
| E [auth B] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053212 | 3002166 | SCOP2B (2022-06-29) |
| EA [auth I] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053077 | 3000433 | SCOP2B (2022-06-29) |
| C [auth A] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8052791 | 3001397 | SCOP2B (2022-06-29) |
| CA [auth L] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052715 | 3002138 | SCOP2B (2022-06-29) |
| CA [auth L] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052717 | 3000135 | SCOP2B (2022-06-29) |
| BA [auth N] | SCOP2B Superfamily | Homeodomain-like | 8052958 | 3000001 | SCOP2B (2022-06-29) |
| BA [auth N] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052959 | 3001284 | SCOP2B (2022-06-29) |
| AA [auth O] | SCOP2B Superfamily | Translational machinery components | 8098844 | 3000571 | SCOP2B (2022-06-29) |
| Y [auth Q] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082685 | 3000100 | SCOP2B (2022-06-29) |
| X [auth S] | SCOP2B Superfamily | S13-like H2TH domain | 8101555 | 3000053 | SCOP2B (2022-06-29) |
| W [auth T] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8089318 | 3000034 | SCOP2B (2022-06-29) |
| T [auth V] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053139 | 3000068 | SCOP2B (2022-06-29) |
| S [auth W] | SCOP2B Superfamily | Ribosomal protein S8 | 8095469 | 3000709 | SCOP2B (2022-06-29) |
| M [auth Z] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8090992 | 3000034 | SCOP2B (2022-06-29) |
| L [auth G] | SCOP2B Superfamily | GS N-terminal domain-like | 8053171 | 3000408 | SCOP2B (2022-06-29) |
| J [auth F] | SCOP2B Superfamily | Ribosomal protein S7 | 8066003 | 3000799 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth e] | e6g4se1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| H [auth E] | e6g4sE1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| G [auth c] | e6g4sc1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| F [auth C] | e6g4sC1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| E [auth B] | e6g4sB1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| D [auth b] | e6g4sb1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| EA [auth I] | e6g4sI1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| DA [auth J] | e6g4sJ1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| C [auth A] | e6g4sA1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| CA [auth L] | e6g4sL1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| BA [auth N] | e6g4sN1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| AA [auth O] | e6g4sO1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| Z [auth P] | e6g4sP1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| Y [auth Q] | e6g4sQ1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| X [auth S] | e6g4sS1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| W [auth T] | e6g4sT1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| T [auth V] | e6g4sV1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| B [auth R] | e6g4sR1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| S [auth W] | e6g4sW1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| R [auth w] | e6g4sw1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| Q [auth X] | e6g4sX1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| P [auth x] | e6g4sx1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| N [auth Y] | e6g4sY1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| M [auth Z] | e6g4sZ1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| L [auth G] | e6g4sG1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| K [auth H] | e6g4sH1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) | |
| J [auth F] | e6g4sF1 | A: OB-fold | X: Nucleic acid-binding protein | H: Nucleotidyltransferase | T: DEAD | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| H [auth E] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
| H [auth E] | PF16121 | 40S ribosomal protein S4 C-terminus (40S_S4_C) | 40S ribosomal protein S4 C-terminus | - | Family |
| H [auth E] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
| H [auth E] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
| F [auth C] | PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | |
| F [auth C] | PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | |
| E [auth B] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
| EA [auth I] | PF01201 | Ribosomal protein S8e (Ribosomal_S8e) | Ribosomal protein S8e | - | Family |
| DA [auth J] | PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family |
| DA [auth J] | PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain |
| C [auth A] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
| C [auth A] | PF16122 | 40S ribosomal protein SA C-terminus (40S_SA_C) | 40S ribosomal protein SA C-terminus | - | Family |
| CA [auth L] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| CA [auth L] | PF16205 | Ribosomal_S17 N-terminal (Ribosomal_S17_N) | Ribosomal_S17 N-terminal | - | Family |
| BA [auth N] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| AA [auth O] | PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family |
| Z [auth P] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| Y [auth Q] | PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family |
| X [auth S] | PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family |
| W [auth T] | PF01090 | Ribosomal protein S19e (Ribosomal_S19e) | Ribosomal protein S19e | - | Family |
| T [auth V] | PF01249 | Ribosomal protein S21e (Ribosomal_S21e) | Ribosomal protein S21e | - | Family |
| S [auth W] | PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | |
| Q [auth X] | PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain |
| N [auth Y] | PF01282 | Ribosomal protein S24e (Ribosomal_S24e) | Ribosomal protein S24e | - | Family |
| N [auth Y] | PF17146 | PIN domain of ribonuclease (PIN_6) | PIN domain of ribonuclease | This is a PIN domain found in eukaryotic ribonuclease Nob1 and archaeal ribonuclease VapC1 [1]. Budding yeast Nob1 is involved in proteasomal and 40S ribosomal subunit biogenesis [2]. VapC1 is a toxic component and a ribonuclease of a toxin-antitoxin ... | Domain |
| L [auth G] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
| J [auth F] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |














