Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyNucleotidyltransferase-like 8042123 3000129 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPsbU/PolX domain-like 8042122 3000893 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyDNA polymerase beta, N-terminal domain-like 8037165 3000524 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDNA polymerase beta, N-terminal domain-like 8037165 3000524 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPsbU/PolX domain-like 8042122 3000893 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyNucleotidyltransferase-like 8042123 3000129 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ADNA_pol_lambd_fe6go5A3 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: DNA_pol_lambd_fECOD (1.6)
AHHH_8e6go5A1 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: HHH_8ECOD (1.6)
ADNA_pol_B_palme6go5A2 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: DNA_pol_B_palmECOD (1.6)
BDNA_pol_lambd_fe6go5B3 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: DNA_pol_lambd_fECOD (1.6)
BHHH_8e6go5B2 A: alpha arraysX: HhH/H2THH: SAM/DNA-glycosylaseT: SAM domain-likeF: HHH_8ECOD (1.6)
BDNA_pol_B_palme6go5B1 A: a+b three layersX: Nucleotidyltransferase-likeH: Nucleotidyltransferase (From Topology)T: NucleotidyltransferaseF: DNA_pol_B_palmECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.10.150.110 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (utative)
A1.10.150.20 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (utative)
A3.30.460.10 Alpha Beta 2-Layer Sandwich Beta Polymerase domain 2CATH (utative)
A3.30.210.10 Alpha Beta 2-Layer Sandwich Beta Polymerase domain 3CATH (utative)
B1.10.150.110 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (utative)
B1.10.150.20 Mainly Alpha Orthogonal Bundle DNA polymerase domain 1CATH (utative)
B3.30.460.10 Alpha Beta 2-Layer Sandwich Beta Polymerase domain 2CATH (utative)
B3.30.210.10 Alpha Beta 2-Layer Sandwich Beta Polymerase domain 3CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF14716Helix-hairpin-helix domain (HHH_8)Helix-hairpin-helix domain- Domain
A, B
PF14791DNA polymerase beta thumb (DNA_pol_B_thumb)DNA polymerase beta thumb- Family
A, B
PF10391Fingers domain of DNA polymerase lambda (DNA_pol_lambd_f)Fingers domain of DNA polymerase lambdaDNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. DNA_pol_lambd_f is the centr ...DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains. There is a general polymerase fold consisting of three subdomains that have been likened to the fingers, palm, and thumb of a right hand. DNA_pol_lambd_f is the central three-helical region of DNA polymerase lambda referred to as the F and G helices of the fingers domain. Contacts with DNA involve this conserved helix-hairpin-helix motif in the fingers region which interacts with the primer strand. This motif is common to several DNA binding proteins and confers a sequence-independent interaction with the DNA backbone [1].
Domain
A, B
PF01909Nucleotidyltransferase domain (NTP_transf_2)Nucleotidyltransferase domainMembers of this family belong to a large family of nucleotidyltransferases [1]. This family includes kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTa ...Members of this family belong to a large family of nucleotidyltransferases [1]. This family includes kanamycin nucleotidyltransferase (KNTase) which is a plasmid-coded enzyme responsible for some types of bacterial resistance to aminoglycosides. KNTase in-activates antibiotics by catalysing the addition of a nucleotidyl group onto the drug.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
DNA nucleotidylexotransferase,DNA-directed DNA/RNA polymerase mu,DNA nucleotidylexotransferase
C [auth H],
G [auth N]
DNA (5'-D(*CP*GP*CP*TP*GP*GP*CP*AP*AP*AP*CP*A)-3')---
D [auth F],
F [auth L]
DNA (5'-D(*TP*GP*TP*TP*TP*G)-3')---
E [auth G],
H [auth M]
DNA (5'-D(*AP*CP*AP*GP*CP*G)-3')---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR037160DNA polymerase, thumb domain superfamilyHomologous Superfamily
A, B
IPR019843DNA polymerase family X, binding siteBinding Site
A, B
IPR001726DNA nucleotidylexotransferase (TdT) / DNA-directed DNA/RNA polymerase muFamily
A, B
IPR029398DNA polymerase beta, thumb domainDomain
A, B
IPR043519Nucleotidyltransferase superfamilyHomologous Superfamily
A, B
IPR001357BRCT domainDomain
A, B
IPR027421DNA polymerase lambda lyase domain superfamilyHomologous Superfamily
A, B
IPR036420BRCT domain superfamilyHomologous Superfamily
A, B
IPR027292DNA nucleotidylexotransferase (TdT)Family
A, B
IPR022312DNA polymerase family XFamily
A, B
IPR010996DNA polymerase beta-like, N-terminal domainDomain
A, B
IPR018944DNA polymerase lambda, fingers domainDomain
A, B
IPR002934Polymerase, nucleotidyl transferase domainDomain
A, B
IPR002054DNA-directed DNA polymerase XDomain
A, B
IPR028207DNA polymerase beta, palm domainDomain
A, B
IPR037160DNA polymerase, thumb domain superfamilyHomologous Superfamily
A, B
IPR019843DNA polymerase family X, binding siteBinding Site
A, B
IPR022312DNA polymerase family XFamily
A, B
IPR010996DNA polymerase beta-like, N-terminal domainDomain
A, B
IPR001726DNA nucleotidylexotransferase (TdT) / DNA-directed DNA/RNA polymerase muFamily
A, B
IPR029398DNA polymerase beta, thumb domainDomain
A, B
IPR018944DNA polymerase lambda, fingers domainDomain
A, B
IPR043519Nucleotidyltransferase superfamilyHomologous Superfamily
A, B
IPR001357BRCT domainDomain
A, B
IPR027421DNA polymerase lambda lyase domain superfamilyHomologous Superfamily
A, B
IPR036420BRCT domain superfamilyHomologous Superfamily
A, B
IPR002054DNA-directed DNA polymerase XDomain
A, B
IPR027249DNA-directed DNA/RNA polymerase muFamily