Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| I [auth D] | OB_NTP_bind | e6gqbD1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| FC [auth AZ] | OB_NTP_bind | e6gqbAZ1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| EC [auth BA] | Histone,Histone_H2A_C | e6gqbBA1 | A: alpha arrays | X: Major facilitator superfamily (MFS) general substrate transporter | H: Major facilitator superfamily (MFS) general substrate transporter | T: Major facilitator superfamily (MFS) general substrate transporter | F: Histone,Histone_H2A_C | ECOD (v295.2) |
| BC [auth AW] | OB_NTP_bind | e6gqbAW1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| H [auth C] | OB_NTP_bind | e6gqbC2 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| H [auth C] | ABC_tran | e6gqbC3 | A: alpha arrays | X: putative RnfG subunit of electron transport complex | H: putative RnfG subunit of electron transport complex | T: Class I glutamine amidotransferase-like | F: ABC_tran | ECOD (v295.2) |
| AC [auth AV] | OB_NTP_bind | e6gqbAV1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| ZB [auth AU] | OB_NTP_bind | e6gqbAU1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| YB [auth AT] | OB_NTP_bind | e6gqbAT1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| XB [auth AS] | OB_NTP_bind | e6gqbAS1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| WB [auth AR] | OB_NTP_bind | e6gqbAR1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| VB [auth AQ] | OB_NTP_bind | e6gqbAQ1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| UB [auth AP] | OB_NTP_bind | e6gqbAP1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| TB [auth AO] | OB_NTP_bind | e6gqbAO1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| SB [auth AN] | OB_NTP_bind | e6gqbAN1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| RB [auth AM] | OB_NTP_bind | e6gqbAM1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| G [auth B] | OB_NTP_bind | e6gqbB1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| QB [auth AL] | OB_NTP_bind | e6gqbAL1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| PB [auth AK] | OB_NTP_bind | e6gqbAK1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| OB [auth AJ] | OB_NTP_bind | e6gqbAJ1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| NB [auth AI] | OB_NTP_bind | e6gqbAI1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| MB [auth AH] | OB_NTP_bind | e6gqbAH1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| LB [auth AG] | OB_NTP_bind | e6gqbAG1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| KB [auth AF] | OB_NTP_bind | e6gqbAF1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| JB [auth AE] | OB_NTP_bind | e6gqbAE1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| IB [auth AD] | OB_NTP_bind | e6gqbAD1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| HB [auth AC] | OB_NTP_bind | e6gqbAC1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| F [auth A] | OB_NTP_bind | e6gqbA1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| GB [auth AB] | OB_NTP_bind | e6gqbAB1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| FB [auth AA] | OB_NTP_bind | e6gqbAA1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| EB [auth z] | OB_NTP_bind | e6gqbz1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| DB [auth y] | OB_NTP_bind | e6gqby1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| CB [auth x] | OB_NTP_bind | e6gqbx1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| BB [auth w] | OB_NTP_bind | e6gqbw1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| AB [auth v] | OB_NTP_bind | e6gqbv1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| ZA [auth u] | OB_NTP_bind | e6gqbu1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| YA [auth t] | OB_NTP_bind | e6gqbt1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| XA [auth s] | V-set | e6gqbs1 | A: alpha arrays | X: Nat/Ivy | H: Acyl-CoA N-acyltransferases (Nat) | T: Acyl-CoA N-acyltransferases (Nat) | F: V-set | ECOD (v295.2) |
| E [auth P2] | OB_NTP_bind | e6gqbP21 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| WA [auth r] | OB_NTP_bind | e6gqbr1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| VA [auth q] | OB_NTP_bind | e6gqbq1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| TA [auth p] | OB_NTP_bind | e6gqbp1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| SA [auth o] | OB_NTP_bind | e6gqbo1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| RA [auth n] | OB_NTP_bind | e6gqbn1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| QA [auth m] | OB_NTP_bind | e6gqbm1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| PA [auth l] | OB_NTP_bind | e6gqbl1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| OA [auth k] | OB_NTP_bind | e6gqbk1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| NA [auth j] | OB_NTP_bind | e6gqbj1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| D [auth P0] | OB_NTP_bind | e6gqbP01 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| MA [auth i] | OB_NTP_bind | e6gqbi1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| LA [auth h] | OB_NTP_bind | e6gqbh1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| KA [auth g] | OB_NTP_bind | e6gqbg1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| JA [auth f] | OB_NTP_bind | e6gqbf1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| IA [auth e] | OB_NTP_bind | e6gqbe1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| HA [auth d] | OB_NTP_bind | e6gqbd1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| GA [auth c] | OB_NTP_bind | e6gqbc1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| FA [auth b] | OB_NTP_bind | e6gqbb1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| EA [auth a] | OB_NTP_bind | e6gqba1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| DA [auth Z] | OB_NTP_bind | e6gqbZ1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| CA [auth Y] | OB_NTP_bind | e6gqbY1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| BA [auth X] | OB_NTP_bind | e6gqbX1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| AA [auth W] | Histone,Histone_H2A_C | e6gqbW1 | A: alpha arrays | X: Major facilitator superfamily (MFS) general substrate transporter | H: Major facilitator superfamily (MFS) general substrate transporter | T: Major facilitator superfamily (MFS) general substrate transporter | F: Histone,Histone_H2A_C | ECOD (v295.2) |
| Z [auth V] | OB_NTP_bind | e6gqbV1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| Y [auth U] | OB_NTP_bind | e6gqbU1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| X [auth T] | OB_NTP_bind | e6gqbT1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| W [auth S] | OB_NTP_bind | e6gqbS1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| V [auth R] | OB_NTP_bind | e6gqbR1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| U [auth Q] | OB_NTP_bind | e6gqbQ1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| T [auth P] | OB_NTP_bind | e6gqbP1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| S [auth O] | OB_NTP_bind | e6gqbO1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| R [auth N] | OB_NTP_bind | e6gqbN1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| Q [auth M] | OB_NTP_bind | e6gqbM1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| P [auth L] | OB_NTP_bind | e6gqbL1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| O [auth J] | OB_NTP_bind | e6gqbJ1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| N [auth I] | OB_NTP_bind | e6gqbI1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| M [auth H] | OB_NTP_bind | e6gqbH1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| L [auth G] | OB_NTP_bind | e6gqbG1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| K [auth F] | OB_NTP_bind | e6gqbF1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
| J [auth E] | OB_NTP_bind | e6gqbE1 | A: alpha arrays | X: L-aspartase middle domain-like | H: gp11/gp12 receptor-binding domain | T: gp11/gp12 receptor-binding domain | F: OB_NTP_bind | ECOD (v295.2) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| FC [auth AZ] | DDE | Parent Component: HIS :  AA0040 :  2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine MOD:00049 |














