6HXW
structure of human CD73 in complex with antibody IPH53
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Metallophos_2_1 | e6hxwA2 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: Metallophos_2_1 | ECOD (1.6) |
A | 5_nucleotid_C | e6hxwA1 | A: a+b complex topology | X: 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain (From Topology) | H: 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain (From Topology) | T: 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | F: 5_nucleotid_C | ECOD (1.6) |
B | Metallophos_2_1 | e6hxwB2 | A: a+b four layers | X: Carbon-nitrogen hydrolase-like | H: Metallo-dependent phosphatases (From Topology) | T: Metallo-dependent phosphatases | F: Metallophos_2_1 | ECOD (1.6) |
B | 5_nucleotid_C | e6hxwB1 | A: a+b complex topology | X: 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain (From Topology) | H: 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain (From Topology) | T: 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain | F: 5_nucleotid_C | ECOD (1.6) |
C | C1-set_1 | e6hxwC2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
C | V-set_10 | e6hxwC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_10 | ECOD (1.6) |
E [auth H] | C1-set_1 | e6hxwH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_1 | ECOD (1.6) |
E [auth H] | V-set_10 | e6hxwH2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_10 | ECOD (1.6) |
D | C1-set_4 | e6hxwD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
D | V-set | e6hxwD2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
F [auth L] | C1-set_4 | e6hxwL2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_4 | ECOD (1.6) |
F [auth L] | V-set | e6hxwL1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.60.21.10 | Alpha Beta | 4-Layer Sandwich | Purple Acid Phosphatase | chain A, domain 2 | CATH (utative) |
A | 3.90.780.10 | Alpha Beta | Alpha-Beta Complex | 5'-nucleotidase | domain 2 | CATH (utative) |
B | 3.60.21.10 | Alpha Beta | 4-Layer Sandwich | Purple Acid Phosphatase | chain A, domain 2 | CATH (utative) |
B | 3.90.780.10 | Alpha Beta | Alpha-Beta Complex | 5'-nucleotidase | domain 2 | CATH (utative) |
C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
E [auth H] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
F [auth L] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C, E [auth H] | Fab IPH53 | VH-CH1 | Homo sapiens (human) | IGHV1-3*01, IGHJ6*01, IGHG1*03, IGHG1*08, IGHG1*06 | V-DOMAIN VH, C-DOMAIN CH1 | IG | FAB-GAMMA-1_KAPPA | IMGT (202449-0) |
D, F [auth L] | Fab IPH53 | L-KAPPA | Homo sapiens (human) | IGKV1-33*01, IGKV1D-33*01, IGKJ2*01, IGKJ2*02, IGKC*01 | V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA | IG | FAB-GAMMA-1_KAPPA | IMGT (202449-0) |
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
C, E [auth H] | Heavy Chain | IGHV1 | - | 5'-nucleotidase | SAbDab (2024-12-13) |
D, F [auth L] | Light Chain | IGKV1 | Kappa | 5'-nucleotidase | SAbDab (2024-12-13) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00149 | Calcineurin-like phosphoesterase (Metallophos) | Calcineurin-like phosphoesterase | This family includes a diverse range of phosphoesterases [1], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases as well as nucleases such as bacterial SbcD Swiss:P13457 or ... | Domain | |
PF02872 | 5'-nucleotidase, C-terminal domain (5_nucleotid_C) | 5'-nucleotidase, C-terminal domain | - | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036907 | 5'-Nucleotidase, C-terminal domain superfamily | Homologous Superfamily | |
IPR006146 | 5'-Nucleotidase, conserved site | Conserved Site | |
IPR006179 | 5'-Nucleotidase/apyrase | Family | |
IPR004843 | Calcineurin-like phosphoesterase domain, ApaH type | Domain | |
IPR029052 | Metallo-dependent phosphatase-like | Homologous Superfamily | |
IPR008334 | 5'-Nucleotidase, C-terminal | Domain |