6K4J | pdb_00006k4j

Crystal Structure of the the CD9

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	C1-set	e6k4jA1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: C1-set	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00335	Tetraspanin family (Tetraspanin)	Tetraspanin family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	CD9 antigen	cell adhesion molecule binding protein-containing complex binding protein binding binding integrin binding signaling receptor binding	sperm-egg recognition sexual reproduction cell-cell recognition reproductive process fertilization cell recognition cellular process single fertilization developmental process tissue regeneration skeletal muscle tissue regeneration cellular developmental process developmental growth myoblast fusion sperm-egg recognition sexual reproduction cell-cell recognition reproductive process fertilization cell recognition cellular process single fertilization developmental process tissue regeneration skeletal muscle tissue regeneration cellular developmental process developmental growth myoblast fusion growth cell-cell fusion syncytium formation by cell-cell fusion myotube differentiation involved in skeletal muscle regeneration muscle cell differentiation regeneration myotube differentiation muscle structure development cell differentiation myoblast fusion involved in skeletal muscle regeneration anatomical structure development striated muscle cell differentiation localization import into cell receptor internalization transport receptor-mediated endocytosis endocytosis establishment of localization vesicle-mediated transport cell population proliferation multicellular organismal process regulation of body fluid levels regulation of cellular process response to stimulus negative regulation of biological process regulation of cell activation negative regulation of cell adhesion negative regulation of platelet activation regulation of coagulation regulation of biological quality response to wounding regulation of biological process negative regulation of homotypic cell-cell adhesion negative regulation of wound healing negative regulation of blood coagulation response to external stimulus blood coagulation negative regulation of hemostasis regulation of platelet activation regulation of response to stimulus negative regulation of response to external stimulus negative regulation of cell-cell adhesion regulation of wound healing negative regulation of multicellular organismal process platelet activation regulation of response to external stimulus homotypic cell-cell adhesion regulation of response to wounding cell adhesion cell-cell adhesion response to stress regulation of response to stress negative regulation of cellular process coagulation regulation of cell-cell adhesion regulation of multicellular organismal process regulation of hemostasis wound healing negative regulation of response to stimulus regulation of homotypic cell-cell adhesion regulation of cell adhesion regulation of blood coagulation biological regulation hemostasis cell activation negative regulation of platelet aggregation negative regulation of response to wounding platelet aggregation negative regulation of cell activation regulation of platelet aggregation negative regulation of coagulation regulation of cell motility regulation of leukocyte migration macrophage migration leukocyte migration regulation of macrophage migration immune system process regulation of locomotion mononuclear cell migration regulation of cell migration myeloid leukocyte migration cell migration regulation of immune system process regulation of mononuclear cell migration cell motility locomotion fusion of sperm to egg plasma membrane involved in single fertilization multicellular organismal reproductive process cellular process involved in reproduction in multicellular organism oligodendrocyte development cell development nervous system development glial cell development multicellular organism development neurogenesis central nervous system development gliogenesis oligodendrocyte differentiation glial cell differentiation system development negative regulation of cell population proliferation regulation of cell population proliferation cellular response to stimulus cellular response to low-density lipoprotein particle stimulus response to endogenous stimulus response to chemical response to lipoprotein particle cellular response to lipoprotein particle stimulus glial cell migration cellular component assembly involved in morphogenesis myelin assembly cellular component organization cellular component biogenesis cellular anatomical entity morphogenesis cellular component assembly cell junction assembly axon ensheathment ensheathment of neurons cellular component organization or biogenesis cell-cell junction assembly cell-cell junction organization myelination anatomical structure morphogenesis cell junction organization anatomical structure formation involved in morphogenesis paranodal junction assembly	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell periphery cell surface membrane plasma membrane external side of plasma membrane side of membrane apical part of cell plasma membrane region apical plasma membrane cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell periphery cell surface membrane plasma membrane external side of plasma membrane side of membrane apical part of cell plasma membrane region apical plasma membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular organelle bounding membrane of organelle cytoplasmic vesicle vesicle membrane clathrin-coated vesicle endocytic vesicle membrane coated vesicle vesicle endocytic vesicle clathrin-coated vesicle membrane clathrin-coated endocytic vesicle membrane intracellular membrane-bounded organelle clathrin-coated endocytic vesicle cytoplasmic vesicle membrane coated vesicle membrane organelle cytoplasm organelle membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular membrane-bounded organelle protein-containing complex platelet alpha granule membrane endomembrane system secretory granule secretory vesicle platelet alpha granule secretory granule membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR042055	CD9, extracellular domain	Domain
A	IPR008952	Tetraspanin, EC2 domain superfamily	Homologous Superfamily
A	IPR000301	Tetraspanin, animals	Family
A	IPR018503	Tetraspanin, conserved site	Conserved Site
A	IPR018499	Tetraspanin/Peripherin	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P21926	glioblastoma acute myeloid leukemia colorectal cancer giant cell glioblastoma Nerve Degeneration non-small cell lung carcinoma germ cell tumor cirrhosis of liver embryonal neoplasm prostate cancer facioscapulohumeral muscular dystrophy tuberculosis invasive ductal breast carcinoma limb-girdle muscular dystrophy ankylosing spondylitis glioblastoma acute myeloid leukemia colorectal cancer giant cell glioblastoma Nerve Degeneration non-small cell lung carcinoma germ cell tumor cirrhosis of liver embryonal neoplasm prostate cancer facioscapulohumeral muscular dystrophy tuberculosis invasive ductal breast carcinoma limb-girdle muscular dystrophy ankylosing spondylitis malignant glioma medulloblastoma colorectal adenoma ovarian cancer Duchenne muscular dystrophy primary biliary cholangitis Emery-Dreifuss muscular dystrophy juvenile dermatomyositis lung cancer Becker muscular dystrophy malignant mesothelioma dermatomyositis pancreatic ductal adenocarcinoma ductal breast carcinoma in situ progressive supranuclear palsy esophageal adenocarcinoma psoriasis gastric carcinoma interstitial cystitis large cell medulloblastoma malignant ependymoma cancer malignant pancreatic neoplasm colorectal carcinoma osteosarcoma Down syndrome pilocytic astrocytoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Transmembrane	Alpha-helical polytopic	Tetraspanin	Tetraspanin

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Tetraspanins	CD9 full-length tetraspanin

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

Prepare Data

Validate Data

Deposit Data

Help and Resources

.id_divider{ color: #ccc; padding: 0 10px 0 10px; } .extended_id_info{ color: #ccc; font-size: 18px; position: relative; top: -10px; left: 4px; } 6K4J | pdb_00006k4j